View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5144_low_4 (Length: 242)
Name: NF5144_low_4
Description: NF5144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5144_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21078368 - 21078609
Alignment:
| Q |
1 |
cacatccttcttccctgtctccttcttggagcaacagagtgatatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatcc |
100 |
Q |
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| T |
21078368 |
cacatccttcttccctgtctccttcttggagcaacagagtgatatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatcc |
21078467 |
T |
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| Q |
101 |
aaatattttcctccaagttcccataaaaagaaaaagcgcagcatcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttgg |
200 |
Q |
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| T |
21078468 |
aaatatttgcctccaagttcccataaaaagaaaaaacgcagcatcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttgg |
21078567 |
T |
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| Q |
201 |
atatgtctcgtggtggtggtggtgatgatgacgatgatgatg |
242 |
Q |
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| T |
21078568 |
atatgtctcgtggtggtggtggtgatgatgacgatgatgatg |
21078609 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 3073780 - 3073724
Alignment:
| Q |
152 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
208 |
Q |
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| T |
3073780 |
agaaatatcattgatcatgaacatcttaatggagcatatacactcttcgatatgtct |
3073724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 30618030 - 30617998
Alignment:
| Q |
210 |
gtggtggtggtggtgatgatgacgatgatgatg |
242 |
Q |
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| T |
30618030 |
gtggtggtggtggtgatgatgatgatgatgatg |
30617998 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 27732144 - 27732088
Alignment:
| Q |
152 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
208 |
Q |
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| T |
27732144 |
agaaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtct |
27732088 |
T |
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