View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5144_low_5 (Length: 239)

Name: NF5144_low_5
Description: NF5144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5144_low_5
NF5144_low_5
[»] chr1 (2 HSPs)
chr1 (15-216)||(17442354-17442553)
chr1 (33-177)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (35-139)||(21943409-21943513)
chr5 (82-129)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (82-177)||(5882036-5882131)
chr7 (90-139)||(8040290-8040339)
chr7 (35-70)||(24578430-24578465)
chr7 (95-140)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (100-165)||(7504292-7504357)
chr4 (31-75)||(3797331-3797375)
chr4 (31-75)||(4216456-4216500)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 17442553 - 17442354
Alignment:
Q  15 gtagcataggccttgagtggattagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattat 114  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  17442553 gtagcacaggccttaagcgggttagtagaaatgtatatcattaacaactatataatgatttagtga--tataatcataagctcaatgtcttttatattat 17442456  T
Q  115 tttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattccaaaacaattcttattatataacaaaaacatggt 214  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17442455 tttatataataaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattctaaaacaatttttattatataacaaaaacatggt 17442356  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 21545519 - 21545660
Alignment:
Q  33 ggattagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattattttatataatgaaaaatt 132  Q
    |||||||| ||||||||||||||||||||||| |||||||  || |  |||||||| ||||||||  |||||||||||||| |||||| |||||||| ||    
T  21545519 ggattagttgaaatgtatatcattaacaactacataatga--tattttgatataattataagctcgttgtcttttatatta-tttatacaatgaaaattt 21545615  T
Q  133 gttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 177  Q
    |||||||   || ||||| ||||||| | ||||||||||||||||    
T  21545616 gttgaatccacagagacatgaaattagtgcaagcagtttgttgaa 21545660  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 21943409 - 21943513
Alignment:
Q  35 attagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattattttatataatgaaaaattgt 134  Q
    |||||| ||||||||||| |||||||| ||||| |||||||  |   ||||||| |||| |||  ||||||||||||||||||||||||| |||| ||||    
T  21943409 attagttgaaatgtatattattaacaaatatattatgattttttttaatataattataaactcgttgtcttttatattattttatataataaaaatttgt 21943508  T
Q  135 tgaat 139  Q
    |||||    
T  21943509 tgaat 21943513  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 20117121 - 20117168
Alignment:
Q  82 atataatcataagctcaatgtcttttatattattttatataatgaaaa 129  Q
    ||||||| |||| |||||| ||||||||||||||||||||| ||||||    
T  20117121 atataattataacctcaatctcttttatattattttatatattgaaaa 20117168  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 5882131 - 5882036
Alignment:
Q  82 atataatcataagctcaatgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 177  Q
    ||||||| ||| ||||| |||||||| ||||||||| ||||||||||| |||||||||   |||||| | ||||| | | |||||||| |||||||    
T  5882131 atataattatatgctcattgtcttttgtattattttgtataatgaaaatttgttgaatccacaaagatatgaaatcagtgcaagcagtatgttgaa 5882036  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 8040290 - 8040339
Alignment:
Q  90 ataagctcaatgtcttttatattattttatataatgaaaaattgttgaat 139  Q
    ||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  8040290 ataagctcattgtcttttatattattttacatatttaaaaattgttgaat 8040339  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 24578465 - 24578430
Alignment:
Q  35 attagtagaaatgtatatcattaacaactatataat 70  Q
    |||||| |||||||||||||||||||||||||||||    
T  24578465 attagttgaaatgtatatcattaacaactatataat 24578430  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 42575233 - 42575279
Alignment:
Q  95 ctcaatgtcttttatattattttata-taatgaaaaattgttgaata 140  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||    
T  42575233 ctcattgtcttttatattattttatattattgaaaaattgttgaata 42575279  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 7504357 - 7504292
Alignment:
Q  100 tgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaag 165  Q
    ||||||||||| |||||||||||||||||| ||||| |||   |||||||| ||||| ||||||||    
T  7504357 tgtcttttatactattttatataatgaaaatttgttaaatccacaaagacatgaaatcatttcaag 7504292  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 3797331 - 3797375
Alignment:
Q  31 gtggattagtagaaatgtatatcattaacaactatataatgattt 75  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  3797331 gtggattagttgaaatgtatattgttaacaactacataatgattt 3797375  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 4216456 - 4216500
Alignment:
Q  31 gtggattagtagaaatgtatatcattaacaactatataatgattt 75  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  4216456 gtggattagttgaaatgtatattgttaacaactacataatgattt 4216500  T

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