View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5144_low_6 (Length: 236)
Name: NF5144_low_6
Description: NF5144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5144_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 25011488 - 25011720
Alignment:
| Q |
5 |
aaacacgttgctttgtcaaattatcgttgcgtgtaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaa |
104 |
Q |
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| T |
25011488 |
aaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaagagtaagtttgaagagaaattattgaa |
25011587 |
T |
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| Q |
105 |
accgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgaccctc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25011588 |
accgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctc |
25011687 |
T |
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| Q |
205 |
tgcctgtgtgcatcttgatgatg-tccatctca |
236 |
Q |
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||||||||||||||||||| ||| ||||||||| |
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| T |
25011688 |
tgcctgtgtgcatcttgattatgatccatctca |
25011720 |
T |
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