View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145-Insertion-1 (Length: 1072)
Name: NF5145-Insertion-1
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 414 - 1046
Target Start/End: Complemental strand, 52268629 - 52267982
Alignment:
| Q |
414 |
tagtcggctgatagcatattgggaatacctacactcaaggcgggattgtacctggtgttggcgctagatttgttaagaacaatgttattttcttgccttg |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268629 |
tagtcggctgatagcatattgggaatacctactctcaaggtgggattgtacctggtgttggcgctagatttgttaagaacaatgttattttcttgccttg |
52268530 |
T |
|
| Q |
514 |
tttgagggaaaagcatgataacccatatatggatgtagtaagttacttggccttggtaaatttgaaagtaggataaccttgtttttaaatatatgtaaat |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52268529 |
tttgagggaaaagcatgataacccatatatggatgtagtaagttacttggccttggtaaatttgaaagtaggataaccttatttttaaatatatgtaaat |
52268430 |
T |
|
| Q |
614 |
cagaa-aaagggttattatgttgaattattacacacaatttggattgtgtatggtagtttcggaatgaattaaaccctacagaaggggtatctgcctggt |
712 |
Q |
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| T |
52268429 |
cagaacaaagggttattatgttgaattattacgcacaatttggattgtgtatggtagtttcggaatgaattaaaccctacagaaggggtatctgcctggt |
52268330 |
T |
|
| Q |
713 |
attgctggcatttacttgcaagatcattatttatgtcaattttttgctatccactgttaccagtttgacgattacctc--tttattttaattttaaggtt |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52268329 |
attgctggcatttacttgcaagatcattatttatgtcaattttttgctatccactgttaccagtttgacgattacctctttttattttaattttaaggtt |
52268230 |
T |
|
| Q |
811 |
ggattcctagccatgaaatcgttagttactggttatccgattcccggttcatgttgtcagccctgttttgttacataagcttcatatt-aaaagataata |
909 |
Q |
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| T |
52268229 |
ggattcctagccatgaaatcgttagttactggttatccgattcccggttcatgttgtcagccctgttttgttacataagcttcatattaaaaagataata |
52268130 |
T |
|
| Q |
910 |
acaa--gatactgataagagtac-aagaatctcttcc-atagttc-aaactccttaagga-tttaatttccagt-cag-cagtcaaccctatatg-catc |
1000 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||| |||| ||| ||||||||||| |||| |||| |
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| T |
52268129 |
acaaagaatactgataagagtacaaagaatctcttccaatagttcaaaactccttaaggattttaattctcagtccagccagtcaaccctctatgccatc |
52268030 |
T |
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| Q |
1001 |
atg-ctaac-aaagagcttcttattggctcattctaactattgcacaa |
1046 |
Q |
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||| ||||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
52268029 |
atgcctaacaaaacagcctcttattggctcattctaactattgcacaa |
52267982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 482
Target Start/End: Complemental strand, 52268676 - 52268641
Alignment:
| Q |
447 |
ctcaaggcgggattgtacctggtgttggcgctagat |
482 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
52268676 |
ctcaaggtgggattgtacctggtgttggcgctagat |
52268641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 376 - 789
Target Start/End: Original strand, 13745516 - 13745926
Alignment:
| Q |
376 |
cctgttaaccatgatctttttcctggaaggtagtcacatagtcggctgatagcatattgggaatacctacactcaaggcgggattgtacctggtgttggc |
475 |
Q |
| |
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|||||||| || ||||||||| | ||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||| | |||||||| ||||||||| |
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| T |
13745516 |
cctgttaatcaggatcttttttccggaaggtagtcacttagtcggctgataccatattgggaatgcctactctcaaggtg--attgtaccaggtgttggc |
13745613 |
T |
|
| Q |
476 |
gctagatttgttaagaacaatgttattttcttgccttgtttgagggaaaagcatgataacccatatatggatgtagtaagttacttggccttggtaaatt |
575 |
Q |
| |
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| T |
13745614 |
gctagattggttaagaactgtgttatttccttgccttgtttgagggaaaagcaagagaacctatttatagatatagtaagttatctggccttgctaaatt |
13745713 |
T |
|
| Q |
576 |
tgaaagtaggataaccttgtttttaaatatatgtaaatcagaaaaagggttattatgttgaattattacacacaatttggattgtgtatggtagtttcgg |
675 |
Q |
| |
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| T |
13745714 |
tgaaagtaggataaccttatttt-aaatatatgtaaatcagaaaaagggttattatgttgaattattacgcacaatttggatcgtgtatggaagtttcag |
13745812 |
T |
|
| Q |
676 |
aatgaattaaaccctacagaaggggtatctgcctggtattgctggcatttacttgcaagatcattatttatgtcaattttttgctatccactgttaccag |
775 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13745813 |
aatgaattaaaccctacagaagggatatctgccaggtattgctggtgtttacttgcaagatcattatttatggcaattttttgctatccactgttaccag |
13745912 |
T |
|
| Q |
776 |
tttgacgattacct |
789 |
Q |
| |
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|||||||||||||| |
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| T |
13745913 |
tttgacgattacct |
13745926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 46 - 374
Target Start/End: Original strand, 13745243 - 13745566
Alignment:
| Q |
46 |
cagggaacgtcacatgcagcagaagatatggacgaagacttctctcctgtagatgcggatgtaaatttagtaaaaagcttgcttgattccttttcttccc |
145 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13745243 |
cagggaacatcacatgcagcagaagacatggatgaggacttctctcctgtagatgtggatgtaaatttagtaaaaagcttgcttgattccttttcttccc |
13745342 |
T |
|
| Q |
146 |
aacaaggacttcctggtcctgcatccaatttgcttgggctcatgggggtgcagttcccacaagatgctaagaagggcaagtgatgtcatgttatgttgtt |
245 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
13745343 |
aacaagggcttcctggtcctgcatccaatttgcttgggctcatgggggtgcagttcccacaagatgctaagaagagcaagtg-----atgttatgttgtt |
13745437 |
T |
|
| Q |
246 |
gctagcgtttttgccgaggtttctaaacttgattggtgctcaaactgggtagtctccaggtgaagaagtgttgcataacctgttaaccaggatctttttc |
345 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||| |||| ||| |||||||||||||||||| |||||||||||| |
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| T |
13745438 |
gctagagtttttgccgaggtttctaaagttgatgggttctcaaacagggtagtctccatgtgatgaaatgttgcataacctgttaatcaggatctttttt |
13745537 |
T |
|
| Q |
346 |
ccggaaggtagtcacatagtctgctgata |
374 |
Q |
| |
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||||||||||||||| ||||| ||||||| |
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| T |
13745538 |
ccggaaggtagtcacttagtcggctgata |
13745566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 803 - 1046
Target Start/End: Original strand, 13745970 - 13746223
Alignment:
| Q |
803 |
ttaaggttggattcctagccatgaaatcgttagttactggttatccgattcccggttcatgttgtcagccctgttttgttacataagcttcatatt-aaa |
901 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||| ||| |
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| T |
13745970 |
ttaaggttggattgctagccatgaaatcgttagttaccggttatccgattcccggttcatgttgtcagccctgctttgttaaacaagctttatattaaaa |
13746069 |
T |
|
| Q |
902 |
agataataacaa--gatactgataagagtac-aagaatctcttc-catagttcaa-actccttaaggatttaatttccagtc--agcagtcaaccctata |
994 |
Q |
| |
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||||||||| || ||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||| |||||| | ||||||| |||||| |
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|
| T |
13746070 |
agataataagaaagcatactgataagagcacaaagaatctcttctaatagttcaaggctccttaaggatttaattcccagtccaaccagtcaa-cctata |
13746168 |
T |
|
| Q |
995 |
tg-catcatg-ctaac-aaagagcttcttattggctcattctaactattgcacaa |
1046 |
Q |
| |
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|| ||||||| ||||| ||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
13746169 |
tgccatcatgcctaacaaaacagcctcttattggctcattctaactattgcacaa |
13746223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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