View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145-Insertion-4 (Length: 747)
Name: NF5145-Insertion-4
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 48398973 - 48398667
Alignment:
| Q |
7 |
agcatcaaatttgttgagttcttgcagcaggtcctactaaccatgtagtgcatcagaagttatcgtccaagaatatcaagagcatctaaacacaacttca |
106 |
Q |
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| T |
48398973 |
agcatcaaatttgttgagttcttgcagcaggtcctactaaccatgtagtgcatcagaagttatcgtccaagaatatcgagagcatctaaacacaacttca |
48398874 |
T |
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| Q |
107 |
gataaatatgtacaagggcatttgtaaaattttggagagcttgtgagcattttctaacaaagttatgtttaacttgtgtaattcaatctatgtatgcgag |
206 |
Q |
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| T |
48398873 |
gataaatatgtacaagggcatttgtaaaattttggagagcttgtgagcattttctaacaaagttatgtttaacttgtgtaattcaatctatgtatgcgag |
48398774 |
T |
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| Q |
207 |
--nnnnnnnnnnnnnnnnggaatatcttcaagtggtgatttgattgaaacatatctaaattaaaaactaacttaattttgtaaattctcgcttagagaat |
304 |
Q |
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| T |
48398773 |
tattttttttttttttttggaatatcttcaagtggtgatttgattgaaacatatctaaattaaaaactaacttaattttgtaaattctcgcttagagaat |
48398674 |
T |
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| Q |
305 |
taatgag |
311 |
Q |
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||||||| |
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| T |
48398673 |
taatgag |
48398667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 453 - 747
Target Start/End: Complemental strand, 48398525 - 48398231
Alignment:
| Q |
453 |
ttgaagctgatataacttaagactttaccccacaataagattgacattagannnnnnnccatggttttggagtacatggttgatatacacagttcttgca |
552 |
Q |
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| T |
48398525 |
ttgaagctgatataacatcagattttaccccacaataagattgacattagatttttttccatggttttggagtacatggttgatatacacagttcttgca |
48398426 |
T |
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| Q |
553 |
tattataaaagcaaaaggctaacatcgaaccttacaaaggnnnnnnnttaaaccttaaaataactcgaagaacacaatcgactgcccttaaatgaaactc |
652 |
Q |
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| T |
48398425 |
tattataaaagcaaaaagctaacatcgaaccctacaaaggaaaaaaactaaaccttaaaataactcgaagaacccaatcgactgcccttaaatgaaactc |
48398326 |
T |
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| Q |
653 |
agcattcttctacatgatacctaatgggtaggaaaacagacaagttaggctttccgaaatacaacacgcctttctcgcttgtactctacttcgtc |
747 |
Q |
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| T |
48398325 |
agcattcttctacatgatacctaatgggtgggaaaacagacaagttaggctttccgaaatacaacacgcctttctcgcttgtactctacttcgtc |
48398231 |
T |
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