View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145-Insertion-5 (Length: 650)
Name: NF5145-Insertion-5
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Complemental strand, 4167313 - 4166671
Alignment:
| Q |
8 |
ctagtgtcgcgccaaggctatgtcccgtaacggttatgcttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcgga |
107 |
Q |
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| T |
4167313 |
ctagtgtcgcaccaaggctatgtcccgtaacggttatgcttaattcttcgcctttgtaaagttcaataaggcgtcgcacttcttcaacaacggactcgga |
4167214 |
T |
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| Q |
108 |
taggctttgcacatgagccccttttgttttgtacaagctcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgagtctgagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4167213 |
taggctttgcacatgagccccttttgttttgtacaagctcatgaacccacactcaactttgggctttgattgggtctgtgtttgagtctgtgtctgagca |
4167114 |
T |
|
| Q |
208 |
tcctcgggtaaatcgactaattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167113 |
tcctcgggtaaatcgactaattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattc |
4167014 |
T |
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| Q |
308 |
ttgcaatctctcttttatcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccattt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167013 |
ttgcaatctctcttttatcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccattt |
4166914 |
T |
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| Q |
408 |
aggtaatccaattgatgatgtggcatacagactcttggttactttataagatctctccggcaacgatacctgttgatgatggggtgcttcagttgttgac |
507 |
Q |
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| T |
4166913 |
aggtaatccaattgatgatgtggcatacagactcttggttactttataagatctctccggcaacgacacctgttggtgatggggtgcttcagttgttgac |
4166814 |
T |
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| Q |
508 |
atggcaggatcagcgtgaaaagcttgataagcagcttgaaccaaatcgccatatctaacaacctctcgccggaggttgtcgtccaagggatccaacatcc |
607 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4166813 |
atggcaggatcagcatgaaaagcttgataagcagcttgaaccaaatcgccatatctaacaacctctcgccggaggttgtcatccaagggatccaacatcc |
4166714 |
T |
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| Q |
608 |
ccttccagtcattgctgccatgatgttccctccactttctccc |
650 |
Q |
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| T |
4166713 |
ccttccagtcattgctgccatgatattccctccactttctccc |
4166671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 225 - 455
Target Start/End: Original strand, 41314614 - 41314844
Alignment:
| Q |
225 |
taattgggccctcatattttcagcccattctagacaagtggaagttccacgaagagatatcacaatatctcttcgtcccattcttgcaatctctctttta |
324 |
Q |
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||||||||| | |||||| || |||||||| ||||| |||| |||||||| ||||| || ||||||||||| | ||| | ||||| |||||||||||| |
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| T |
41314614 |
taattgggctcgcatattctcggcccattcaagacacgtggcggttccacggagagagataacaatatctctccttcctaatcttgaaatctctcttttg |
41314713 |
T |
|
| Q |
325 |
tcgtcgcaaactgcaacatatccgacccagctagaacgctgggtcatccaaccaagatctggagccacctcatcaacccatttaggtaatccaattgatg |
424 |
Q |
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|||| |||||| || |||||||| | |||||| || | |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
41314714 |
tcgttgcaaacagccacatatccaatccagctggatctctgggtcatccatccgagatccggagccacatcatcaacccatttaggtaaaccaattgatg |
41314813 |
T |
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| Q |
425 |
atgtggcatacagactcttggttactttata |
455 |
Q |
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| T |
41314814 |
atgtggcatataaacttttagttactttata |
41314844 |
T |
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