View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145-Insertion-6 (Length: 581)
Name: NF5145-Insertion-6
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Original strand, 1450542 - 1451113
Alignment:
| Q |
8 |
gaaatatcaatctcattttcagtgttaaatttcaataccaatgtagacggatccttgccggaagtcctaattcagatcctgaacatgaactccttaagag |
107 |
Q |
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| T |
1450542 |
gaaatatcaatctcattttcagtgttaaatttcaataccagtgtagacggatccttgctggaagtcctaattcagatcctgaacatgaactccttaagag |
1450641 |
T |
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| Q |
108 |
tgctacaatttcaagagcactctctgtatccatctctgcaggttctaaatgttactagaaaaattgcctccatctgtgcattggttttgtgattggaaat |
207 |
Q |
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| T |
1450642 |
tgctacaatttcaagagcactctctgtatccatctctgcaggttctaaatgttactagaaaaattgcctccatctgtgcattggttttgtgattggaaat |
1450741 |
T |
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| Q |
208 |
ccatccatacctttaaattttttaatgtttttgtgcagatacaagaaaagacttggagtgaagtactaataaggaatgaacattttataaaatgtattag |
307 |
Q |
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| T |
1450742 |
ccatccatacctttaaattttttaatgtttttgtgcagatacaagaaaagacttggagtgaagtactaataaggaatgaacattttataaaatgtattag |
1450841 |
T |
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| Q |
308 |
gatttaggcgcatatgtatagaatcatatcatggtgctgtaagtgtaaataatgttttcttgtgtgacaagatactgtagctattgttgctgttttatat |
407 |
Q |
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| T |
1450842 |
gatttaggcgcatatgtatagaatcatatcatggtgctgtaagtgtaaataatgttttcttgtgtgacaagatactgtagctattgttgctgttttatat |
1450941 |
T |
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| Q |
408 |
ttactgctcttgactttaggtgtgtatttgtaacctgtttcaaataaataatttactgctgccnnnnnnnnnnnnctacgtctaagtctactacgcgatt |
507 |
Q |
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| T |
1450942 |
ttactgctcttgactttaggtgtgtatttgtaacctgtttcaaataaataatttactgctgcc--ttttttttttctacgtctaagtctactacacgatt |
1451039 |
T |
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| Q |
508 |
gagtgtcctctccaacccttcatagaaggtcggtggtttggaccctaacgatgttgagttcggatgatttaaat |
581 |
Q |
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| T |
1451040 |
gagtgtcctctccaacccttcatagaaggtcggtggtttggacactaacgatgttgagttcggatgatttaaat |
1451113 |
T |
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