View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145-Insertion-7 (Length: 280)
Name: NF5145-Insertion-7
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 37815035 - 37815306
Alignment:
| Q |
8 |
tctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactggctgttatcgttcataacattcatcttaggataggttgaa |
107 |
Q |
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| T |
37815035 |
tctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaataa-ctggctgttatcgttcataacattcatcttaggataggttgaa |
37815133 |
T |
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| Q |
108 |
ataacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaatttttaattttctaaccaattgatatgtta |
207 |
Q |
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| T |
37815134 |
acaacgaaaactttatttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaagttttaattttctaaccaatggatatgtta |
37815233 |
T |
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| Q |
208 |
tagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcagaaattccttcagc |
280 |
Q |
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| T |
37815234 |
tagaatttcttccattttcactatgaatgtttgaatggaatggttacaaattacaatcagaaattccttcagc |
37815306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 37645813 - 37645731
Alignment:
| Q |
8 |
tctttgagagtatcgatttgtttgagttgctcaagcttatagctccaccaaaataaactggctgttatcgttcataacattcat |
91 |
Q |
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| T |
37645813 |
tctttgagagtatcgatttgtttgtgttgctcaaggttatagctccaccaaaat-aactggctgttatcgttcataacattcat |
37645731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 37645669 - 37645608
Alignment:
| Q |
122 |
atttataatcaaacagccacctttattgtaaaattcaaggttaaccctaaattcaattttta |
183 |
Q |
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| T |
37645669 |
atttataatgaaacagccacctttgttgtaaaattcaagtttaaccctaaattcaagtttta |
37645608 |
T |
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