View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5145_high_12 (Length: 291)
Name: NF5145_high_12
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 13335953 - 13336218
Alignment:
| Q |
10 |
cataggccattgtcaacaaagagttgcactattgttcatggactttgttttagagtgattatgattagcagtaaaatttaaatttaaaggtcaatcattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13335953 |
cataggccattgtcaacaaagagttgcactattgttcatggactttgttttagagtgattatgattagcagtaaaatttaaatttaaaggtcaatcattt |
13336052 |
T |
|
| Q |
110 |
tgcaatggcaacgatactttcaatgatttttcaaatattgtctcaacattatcctcgttagaatattcccaaatatcacactcccttcttgtatgtatat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13336053 |
tgcaatggcaacgatactttcaatgatttttcaaatattttctcaacattatcctcgttagaatattcccaaatatcacactcccttcttgtatgtatat |
13336152 |
T |
|
| Q |
210 |
ggttgatcgtttacaaaagagacatcaagattttggtgtttggtaattggaacaatgtaagcttcc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13336153 |
ggttgatcgtttacaaaagagacatcaagattttggtgtttggtaattggaacaatgtaagcttcc |
13336218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 13339284 - 13339556
Alignment:
| Q |
10 |
cataggccattgtcaacaaagagttgcactattgttcatggactttgttttagagtgattatgattagcagtaaaatttaaatttaaaggtcaatcattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339284 |
cataggccattgtcaacaaagagttgcactattgttcatggactttgttttagagtgattatgattagcagtaaaatttaaatttaaaggtcaatcattt |
13339383 |
T |
|
| Q |
110 |
tgcaatggcaa-------cgatactttcaatgatttttcaaatattgtctcaacattatcctcgttagaatattcccaaatatcacactcccttcttgta |
202 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13339384 |
tgcaatggcaattggcaacaatactttcaatgatttttcaaatattttctcaacattatcctcgttataatattcccaaatatcacactcccttcttgta |
13339483 |
T |
|
| Q |
203 |
tgtatatggttgatcgtttacaaaagagacatcaagattttggtgtttggtaattggaacaatgtaagcttcc |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339484 |
tgtatatggttgatcgtttacaaaagaaacatcaagattttggtgtttggtaattggaacaatgtaagcttcc |
13339556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 13345184 - 13345335
Alignment:
| Q |
101 |
caatcattttgcaatggcaac-gatactttcaatgatttttcaaatattgtctcaacattatcctcgttagaatattcccaaatatcaca-ctcccttct |
198 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||| || |||||||| ||||||||||||||||||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
13345184 |
caatcattttgcaatggtaaccgatactttcaacgatattgcaaatattttctcaacattatcctcgttggaatattcccaaatattacaccccccttct |
13345283 |
T |
|
| Q |
199 |
tgtatgtatatggttgatcgtttacaaaagagacatcaagattttggtgttt |
250 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
13345284 |
tgtatgtatatggctgatggtttacaaaagagacatgaagattttggagttt |
13345335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University