View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_high_16 (Length: 277)
Name: NF5145_high_16
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 27688847 - 27689100
Alignment:
| Q |
7 |
gtggtgctgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttccttgtattattaaaca |
106 |
Q |
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| T |
27688847 |
gtggtgctgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttcctcgtattattaaaca |
27688946 |
T |
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| Q |
107 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcaagaa |
206 |
Q |
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| T |
27688947 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcaagaa |
27689046 |
T |
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| Q |
207 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
260 |
Q |
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| T |
27689047 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
27689100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 31401559 - 31401812
Alignment:
| Q |
7 |
gtggtgctgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttccttgtattattaaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31401559 |
gtggtgctgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttcctcgtattattaaaca |
31401658 |
T |
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| Q |
107 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcaagaa |
206 |
Q |
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| T |
31401659 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcatgaa |
31401758 |
T |
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| Q |
207 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31401759 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
31401812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 13711289 - 13711542
Alignment:
| Q |
7 |
gtggtgctgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttccttgtattattaaaca |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
13711289 |
gtggtgttgtttactttttgactatagttgatgattgttcgcgtgcggtatgggtatacttattgaaaacaaaagatgaagttcctcgtattattaaata |
13711388 |
T |
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| Q |
107 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcaagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13711389 |
attttttgctatggtacataggcaacataacaaacaaattaaagttttgagaagtgataatggaactgagtttcgaggactgaaaagctattttcatgaa |
13711488 |
T |
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| Q |
207 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13711489 |
agtggtgtcctccatcaaacttcaattcgctatacacctcaacaaaatggaagg |
13711542 |
T |
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