View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_high_24 (Length: 239)
Name: NF5145_high_24
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48594212 - 48594431
Alignment:
| Q |
1 |
ttctcttccgaactgatatagaacctctttgatgatccctaaagattttgatctctgaagaatccctcatatcctcaagactaatatactgttgcttaac |
100 |
Q |
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| T |
48594212 |
ttctcttccgaactgatatagaacctctttgatgatccctaaagattttgatctctgaagaatccctcatatcctcaagactaatatactgttgcttaac |
48594311 |
T |
|
| Q |
101 |
catctttaaggaattatgacacccagtgtcatgaatccaaatataaggatgactagtttcatcataggaatacaacaagttcttcaaattttcaccaaca |
200 |
Q |
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| T |
48594312 |
catctttaaggaattatgacacccagtgtcatgaatccaaatataaggatgactagtttcatcataggaatacaacaagttcttcaaattttcaccaaca |
48594411 |
T |
|
| Q |
201 |
ctgccattcctaggcatata |
220 |
Q |
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|||||||||||||||||||| |
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| T |
48594412 |
ctgccattcctaggcatata |
48594431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 7625088 - 7624935
Alignment:
| Q |
22 |
aacctctttgatgatccctaaagattttgatctctgaagaatccctcatatcctcaagactaatatactgttgcttaaccatctttaaggaattatgaca |
121 |
Q |
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||||||| || |||||||| ||||| | ||||| ||||| | ||| ||| ||||| ||||||||||||||||| |||||| ||||||||| | | |
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| T |
7625088 |
aacctctgtggtgatcccttaagatcctaatctcagaagacatcttcaaatcttcaaggctaatatactgttgctttaccatccttaaggaatca---cc |
7624992 |
T |
|
| Q |
122 |
cccagtgtcatgaatccaaatataaggatgactagtttcatcataggaatacaacaa |
178 |
Q |
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| | | ||||||||||| |||||||| |||| ||| ||||||||| |||||||||| |
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| T |
7624991 |
ctctatatcatgaatccatatataagggtgacaagtctcatcatagtaatacaacaa |
7624935 |
T |
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