View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_high_3 (Length: 452)
Name: NF5145_high_3
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_3 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 41572767 - 41572399
Alignment:
| Q |
1 |
gctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgccgtagtgtggaatttattgagggtgaga |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41572767 |
gctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcatgccgtagtgtggaatttattgagggtgaga |
41572668 |
T |
|
| Q |
101 |
aatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaaggttatatcgaggagatgtattctttgccgtttgaaggtgc |
199 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
41572667 |
aatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaaggttatatcgtggagatgtattcttagccgtttgaaggtgc |
41572568 |
T |
|
| Q |
200 |
cggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggttttagcagtaaacaagtttgaggct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572567 |
cggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggttttagcagtaaacaagtttgaggct |
41572468 |
T |
|
| Q |
300 |
ggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
368 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41572467 |
ggggtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagccttatta |
41572399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 27753735 - 27754102
Alignment:
| Q |
1 |
gctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgccgtagtgtggaatttattgagggtgaga |
100 |
Q |
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||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27753735 |
gctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggattccggttgatttggcacgccgtagtgtggaatttatggagggtgaga |
27753834 |
T |
|
| Q |
101 |
aatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtacggtggaggctgtgaaggttatatcgaggagatgtattctttgccgtttgaaggtgc |
199 |
Q |
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||||| |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |
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| T |
27753835 |
aatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggctgtgaaggttatgtcgtggagatggtttcttagccgtttgaaggtgc |
27753934 |
T |
|
| Q |
200 |
cggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggttttagcagtaaacaagtttgaggct |
299 |
Q |
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| T |
27753935 |
cggcgtgtttgttctacgagtgaagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggttttagcagt-aacaagtttgaggct |
27754033 |
T |
|
| Q |
300 |
ggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
368 |
Q |
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||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27754034 |
ggggtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcatatggcagcctcatta |
27754102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 10909566 - 10909508
Alignment:
| Q |
59 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
117 |
Q |
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|||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| |
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| T |
10909566 |
ttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 21942284 - 21941917
Alignment:
| Q |
1 |
gctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgccgtagtgtggaatttattgagggtgaga |
100 |
Q |
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||||||| ||| |||||||||||||| || | ||| ||| || ||||| ||||| ||| ||||||| ||||| ||||| ||| | | |||||||||| |
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| T |
21942284 |
gctgtgggaggtctggaatgtggcagcgggtaataatgggattcgcaagggcttccggttggtttggcatgccgtcgtgtgaaatctttggagggtgaga |
21942185 |
T |
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| Q |
101 |
aatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtacggtggaggctgtgaaggttatatcgaggagatgtattcttt-gccgtttgaaggtg |
198 |
Q |
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||||||| ||||||||||||| |||||| || || ||| |||||||||||| |||||||| || ||| ||||||| ||||| ||||||| ||| || |
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| T |
21942184 |
aatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtggagatgg-ttcttgagccgtttaaagatg |
21942086 |
T |
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| Q |
199 |
ccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaa-tgaggaggtgttcagcggttttagcagtaaacaagtttgagg |
297 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||| || | | | || || ||||| |||| ||||| |||||| |
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| T |
21942085 |
ccgacgtgtttgttctacgagtggtgttggaatccaaaagcatgtctcttacagtaacggacgggtttctctgcagttttcgcag-ctacaagattgagg |
21941987 |
T |
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| Q |
298 |
ctggggtatcctgtg-tatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatt |
367 |
Q |
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||||||||| | ||| || ||||||||||| |||||||| ||||||||| | | |||||||||||||||| |
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| T |
21941986 |
ctggggtatgccgtgttaaattgcggtgacatgtgctgg-tttgtgcaggatggtatatggcagcctcatt |
21941917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 13725863 - 13725921
Alignment:
| Q |
59 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
117 |
Q |
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|||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||| |
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| T |
13725863 |
ttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaa |
13725921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 26728806 - 26728864
Alignment:
| Q |
56 |
cgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaatttt |
114 |
Q |
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|||||||||||||| ||||| ||||||| | ||| ||||| ||||||||| |||||||| |
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| T |
26728806 |
cgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttt |
26728864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 138683 - 138728
Alignment:
| Q |
190 |
ttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaa |
235 |
Q |
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| T |
138683 |
ttgaacgtgccggcttgtttgttttacgagtggagttggaacccaa |
138728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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