View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_high_6 (Length: 419)
Name: NF5145_high_6
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 4823766 - 4823359
Alignment:
| Q |
1 |
ttttgcttcattgtcataataataaactttttctatatgctaataatgcttttatattgtaaattgtggtgaatcgcatatacaaatgaaaaagatatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
4823766 |
ttttgcttcattgtcataataataaactttttctatatgctaataatgcttttatattgtaaattggggtgaatcacatatacaaatgaaaaagatatat |
4823667 |
T |
|
| Q |
101 |
gctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaacaatgactaatccttgtttgagaacatatttgacacacaatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823666 |
gctagtaaagcttcaaatcaattttattgcacactgcactttctaacacagtttaacaatgactaatccttgtttgagaacatatttgacacacaatgtg |
4823567 |
T |
|
| Q |
201 |
ggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaacttttgatcactagcttaaactactcgagtcccttactactcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823566 |
ggttttattctcacctcccagccggattttcttcctatacgtgatttcaaaatcaaacttttgatcactagcttaaactactcgagtcccttactactcg |
4823467 |
T |
|
| Q |
301 |
gaccaacatatagtttgtccagaaaccctatttcatttaaaagcaagcacttaagtgcaccaaaaacttaaaacttagttgaatctaagtctatatggta |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4823466 |
gaccaacatatagtttgtccagaaaacctatttcatttaaaagcaagcacttaagtgcaccaaaaacttaaaacttagttgaatctaagtctatatggta |
4823367 |
T |
|
| Q |
401 |
catagtat |
408 |
Q |
| |
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|||||||| |
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|
| T |
4823366 |
catagtat |
4823359 |
T |
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