View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_high_7 (Length: 407)
Name: NF5145_high_7
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 27260213 - 27259842
Alignment:
| Q |
20 |
ttcaataaccatccttttacatctgatgccggaaaactttttcgccggttttctggccttgctgcaatatttttactacctcttcctttcacttgtcctc |
119 |
Q |
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| T |
27260213 |
ttcaataaccatccttttacatctgatgccggaaaactttttcgccggttttctggccttgctgcaatatttttactacctcttcctttcacttgtcctt |
27260114 |
T |
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| Q |
120 |
actgtcagtccgactctcaggctagtaggaaacggaattcaatatctcttcattgcgaacaaaatttcttcagcaataaatttattacaaaagagatttt |
219 |
Q |
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| T |
27260113 |
actgttagtccgactctcaggctaataggaaacggaattcaatatctcttcattgcgaacaaaatttcttcagcaataaatttattacaaaagagatttt |
27260014 |
T |
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| Q |
220 |
atttgcaataacgagatatttgattccatattgtattagtagagtggccagatgggagttaaatagcagcaaagccaaacataaaccaaaatcggacaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27260013 |
gtttgcaataacgagatatttgattccatattgtattagtagagtcgccagatgggagttaaatagcagcaaagccaaacataaaccaaaatcggacaag |
27259914 |
T |
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| Q |
320 |
aaaacattgagaccaagttatagtgtaataagaaaatgtaacatttgaactaatagtattagatttcttcat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27259913 |
aaaacattgagaccaagttatagtgtaataagaaaatgtaacatttgaactaatagtattagatttcttcat |
27259842 |
T |
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