View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5145_low_10 (Length: 363)

Name: NF5145_low_10
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5145_low_10
NF5145_low_10
[»] scaffold0238 (1 HSPs)
scaffold0238 (24-253)||(12602-12831)
[»] chr2 (2 HSPs)
chr2 (24-253)||(10452760-10452995)
chr2 (35-92)||(14455914-14455971)
[»] chr1 (2 HSPs)
chr1 (24-253)||(12604113-12604330)
chr1 (35-199)||(23261389-23261554)
[»] chr6 (1 HSPs)
chr6 (39-95)||(21547848-21547904)
[»] chr4 (3 HSPs)
chr4 (35-199)||(56478393-56478558)
chr4 (163-228)||(6898166-6898231)
chr4 (39-104)||(6898330-6898395)
[»] chr5 (1 HSPs)
chr5 (163-253)||(33619228-33619317)
[»] chr7 (1 HSPs)
chr7 (39-104)||(39741872-39741937)


Alignment Details
Target: scaffold0238 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 12602 - 12831
Alignment:
Q  24 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  12602 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatgttgattttgattgacaatttcgttggcaatgtgaccgacg 12701  T
Q  124 attccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatggg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12702 attccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatggg 12801  T
Q  224 aggatcaaggcttaaagctacggcagtgag 253  Q
    ||||||||||||||||||||||||||||||    
T  12802 aggatcaaggcttaaagctacggcagtgag 12831  T

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Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 10452760 - 10452995
Alignment:
Q  24 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  |||    
T  10452760 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatatcgattttgattgacaatttcgttggcaatttgactaacg 10452859  T
Q  124 attccatcattagttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatg 217  Q
    |||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10452860 attccatcattagttatactatttgaattttattttgattttggatttttattcatttctactttaggttttagattgcatcatgtgccatgttacaatg 10452959  T
Q  218 gatgggaggatcaaggcttaaagctacggcagtgag 253  Q
    |||||||||||||||||||||||||||| |||||||    
T  10452960 gatgggaggatcaaggcttaaagctacgacagtgag 10452995  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 14455971 - 14455914
Alignment:
Q  35 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttg 92  Q
    |||||||||||||||||||||| |||||| |||||||||  |||| |||| |||||||    
T  14455971 tttgttctttctcaatttcttactcaatttgttctttctcgatttaatatcgattttg 14455914  T

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Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 12604330 - 12604113
Alignment:
Q  24 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            || |||||||||||||||||||||||||     
T  12604330 tatgtaatatgtttgttctttctcaatttcttattcaattcgttctttctaaatttgat------------tgacaatttcgttggcaatttgaccgacc 12604243  T
Q  124 attccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatggg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12604242 attccatcattagttatactatttgaatttgattttggattttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatggg 12604143  T
Q  224 aggatcaaggcttaaagctacggcagtgag 253  Q
    ||||||||||||||||||||||||||||||    
T  12604142 aggatcaaggcttaaagctacggcagtgag 12604113  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 23261389 - 23261554
Alignment:
Q  35 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcatt 134  Q
    ||||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||  ||    
T  23261389 tttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccatagtt 23261481  T
Q  135 a--gttatactatttgaa------tttgattttggattttgattcatttctactttaggttttagattgcatc 199  Q
    |   ||||||||||  ||      ||||||||  | ||||||||||||| |||||||| ||||||||||||||    
T  23261482 aattttatactattccaattcaattttgatttcagcttttgattcatttatactttagattttagattgcatc 23261554  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 21547904 - 21547848
Alignment:
Q  39 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgatt 95  Q
    |||||||||||||||||||||| ||  |||||||| |||||||||| ||||||||||    
T  21547904 ttctttctcaatttcttattcagttttttctttctcaatttgatatcgattttgatt 21547848  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 56478558 - 56478393
Alignment:
Q  35 tttgttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttcgttggcaatttgaccgacgattccatcatt 134  Q
    ||||||||||||||||||||||||       |||||||||||||||| || ||||||||||  | ||||| || |||||||||| ||| |||||||  ||    
T  56478558 tttgttctttctcaatttcttatt-------ttctttctaaatttgacatcgattttgattaacgatttcatttgcaatttgactgacaattccatagtt 56478466  T
Q  135 agtt--atactatttgaatttgattttg------gattttgattcatttctactttaggttttagattgcatc 199  Q
    | ||  ||||||||  ||||  ||||||      | ||||||||||||| |||||||| ||||||||||||||    
T  56478465 aattttatactattccaattcaattttgatttcagcttttgattcatttatactttagtttttagattgcatc 56478393  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 6898231 - 6898166
Alignment:
Q  163 ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggat 228  Q
    ||||||||  |||||||| || |||||||| | ||||||||  ||||||||||| |||||||||||    
T  6898231 ttttgatttgtttctactataagttttagaatccatcatgtagcatgttgcaattgatgggaggat 6898166  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 6898395 - 6898330
Alignment:
Q  39 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 104  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  6898395 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 6898330  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 33619317 - 33619228
Alignment:
Q  163 ttttgattcatttctactttaggttttagattgcatcatgtgccatgttgcaatggatgggaggatcaaggcttaaagctacggcagtgag 253  Q
    ||||||||  |||||||| ||||||||||| | |||||||| |||||||| | | ||||||||||| |||||| |||| ||  ||||||||    
T  33619317 ttttgatttgtttctactataggttttagaatccatcatgtaccatgttgtagttgatgggaggat-aaggctgaaagttagtgcagtgag 33619228  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 39741937 - 39741872
Alignment:
Q  39 ttctttctcaatttcttattcaattcgttctttctaaatttgatattgattttgattgtcaatttc 104  Q
    |||||||||||||||| ||||||||  ||||||||  |||||||||  |||||||||  |||||||    
T  39741937 ttctttctcaatttctcattcaatttcttctttctcgatttgatatcaattttgatttacaatttc 39741872  T

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