View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5145_low_15 (Length: 284)

Name: NF5145_low_15
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5145_low_15
NF5145_low_15
[»] chr7 (6 HSPs)
chr7 (9-265)||(45365876-45366132)
chr7 (35-107)||(29974276-29974348)
chr7 (73-126)||(5934582-5934635)
chr7 (37-124)||(1786663-1786749)
chr7 (60-125)||(4888730-4888795)
chr7 (151-188)||(31307209-31307246)
[»] chr2 (5 HSPs)
chr2 (36-126)||(33051596-33051685)
chr2 (60-101)||(27956199-27956240)
chr2 (60-104)||(31634104-31634148)
chr2 (60-104)||(2155967-2156011)
chr2 (70-126)||(5171640-5171696)
[»] chr1 (2 HSPs)
chr1 (47-124)||(8967836-8967913)
chr1 (60-104)||(13444033-13444077)
[»] chr5 (2 HSPs)
chr5 (36-123)||(22440839-22440924)
chr5 (65-126)||(18252394-18252455)
[»] chr8 (2 HSPs)
chr8 (60-101)||(22921895-22921936)
chr8 (60-101)||(37189869-37189910)
[»] chr4 (3 HSPs)
chr4 (73-126)||(38888048-38888101)
chr4 (70-126)||(9260551-9260607)
chr4 (70-126)||(18657097-18657153)
[»] scaffold0110 (1 HSPs)
scaffold0110 (67-126)||(45343-45403)
[»] scaffold0054 (1 HSPs)
scaffold0054 (61-101)||(37714-37754)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 45366132 - 45365876
Alignment:
Q  9 gaagaaaatgacacgtgggagcaaaaactagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcag 108  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366132 gaagaatatgacacgtgggagcgaaaactagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcag 45366033  T
Q  109 aatccactagaaattgagtactaagtaaatgctaatgggctgaaaatccaaaacataaattattaaaattggaatgaaatgataaaatctaatttgtggc 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366032 aatccattagaaattgagtactaagtaaatgctaatgggctgaaaatccaaaacataaattattaaaattggaatgaaatgataaaatctaatttgtggc 45365933  T
Q  209 cttcaaatgaactcgtgagtcaattccctttctaaaaaggtattttattagtcattc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45365932 cttcaaatgaactcgtgagtcaattccctttctaaaaaggtattttattagtcattc 45365876  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 29974276 - 29974348
Alignment:
Q  35 actagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttca 107  Q
    ||||||||| | ||||| || ||||||||||||| || ||||| ||| |||||||||||||||||||||||||    
T  29974276 actagcaagcgttaaatttagatagagaaaagaacaaatttgcaagctacaaacctatgaaaataggatttca 29974348  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 5934635 - 5934582
Alignment:
Q  73 tttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    ||||| |||||||||| | ||||||||||||||||||||||| |||||||||||    
T  5934635 tttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgag 5934582  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 1786749 - 1786663
Alignment:
Q  37 tagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattg 124  Q
    |||||||||||||| ||| ||||| |||| || |||||||| |||||||||| |  ||||||||| || |||||||||  ||||||||    
T  1786749 tagcaagtgctaaacctagataga-aaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattg 1786663  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 4888730 - 4888795
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattga 125  Q
    ||||||||| |||||||| |||||||||||| |||||||||  || | |||| ||| |||||||||    
T  4888730 agaaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaattga 4888795  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 31307246 - 31307209
Alignment:
Q  151 aaaatccaaaacataaattattaaaattggaatgaaat 188  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  31307246 aaaatccaaaacaaaaattattaaaattggactgaaat 31307209  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 33051685 - 33051596
Alignment:
Q  36 ctagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    |||||||| |||||| |||||| || ||||||| |||||||| |||||||||| | |||||||||| ||   |||||||||||||||||||    
T  33051685 ctagcaagcgctaaacctaaattga-aaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgag 33051596  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 27956199 - 27956240
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 101  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  27956199 agaaaagaacaagtttgcaagcgacaaacctatgaaaatagg 27956240  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 31634148 - 31634104
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 104  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  31634148 agaaaagaacaagtttgctagcgacaaacttgtgaaaataggatt 31634104  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 2156011 - 2155967
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 104  Q
    ||||||||| |||||||| |||||||||| | |||||||||||||    
T  2156011 agaaaagaacaagtttgcgagcgacaaacttgtgaaaataggatt 2155967  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 5171640 - 5171696
Alignment:
Q  70 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    |||||||| |||||||||| | | |||||||| ||  ||||||||||||||||||||    
T  5171640 aagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgag 5171696  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 8967836 - 8967913
Alignment:
Q  47 taaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattg 124  Q
    |||| ||| ||||||||||||| |||||||| |  |||||||||||||||||||| || |||||||||| | ||||||    
T  8967836 taaacctagatagagaaaagaacaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattg 8967913  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 13444033 - 13444077
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaataggatt 104  Q
    ||||||||| |||||||| |||||||||| | |||||||||||||    
T  13444033 agaaaagaacaagtttgcaagcgacaaacttgtgaaaataggatt 13444077  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 22440924 - 22440839
Alignment:
Q  36 ctagcaagtgctaaatctaaatagagaaaagaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaatt 123  Q
    ||||||||||||||| ||| |||||  |||||| | ||| || |||||||||| ||||| |||||| || ||||||||||||||||||    
T  22440924 ctagcaagtgctaaacctagataga--aaagaacatgttcgcaagcgacaaacttatgataatagggttccagaatccactagaaatt 22440839  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 18252455 - 18252394
Alignment:
Q  65 agaataagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    |||| |||||||| |||||||||||| |||||||||| ||  | ||||||||||||||||||    
T  18252455 agaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgag 18252394  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 22921895 - 22921936
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 101  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  22921895 agaaaagaataagtttgcaagcgacaaacttgtgaaaatagg 22921936  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 37189910 - 37189869
Alignment:
Q  60 agaaaagaataagtttgctagcgacaaacctatgaaaatagg 101  Q
    |||||||||||||||||| |||||||||| | ||||||||||    
T  37189910 agaaaagaataagtttgcaagcgacaaacttgtgaaaatagg 37189869  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 38888048 - 38888101
Alignment:
Q  73 tttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    ||||| |||||||||| | |||||||||| |||| ||||||| |||||||||||    
T  38888048 tttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgag 38888101  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 9260607 - 9260551
Alignment:
Q  70 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    |||||||| | |||||||| |  ||||||||| ||||||||||||| ||||||||||    
T  9260607 aagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgag 9260551  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 18657097 - 18657153
Alignment:
Q  70 aagtttgctagcgacaaacctatgaaaataggatttcagaatccactagaaattgag 126  Q
    ||||||||  ||||||||| | | ||||||||||||||||||||||  |||||||||    
T  18657097 aagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgag 18657153  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 45343 - 45403
Alignment:
Q  67 aataagtttgctagcgacaaacctatgaaaat-aggatttcagaatccactagaaattgag 126  Q
    |||||| |||| |||||||||||||| ||||| ||| || |||||||||| ||||||||||    
T  45343 aataaggttgcaagcgacaaacctatcaaaataagggttccagaatccaccagaaattgag 45403  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 37754 - 37714
Alignment:
Q  61 gaaaagaataagtttgctagcgacaaacctatgaaaatagg 101  Q
    |||||||| |||||||| |||||||||| ||||||||||||    
T  37754 gaaaagaacaagtttgcaagcgacaaacttatgaaaatagg 37714  T

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