View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_16 (Length: 282)
Name: NF5145_low_16
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 4631911 - 4631661
Alignment:
| Q |
21 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
120 |
Q |
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| T |
4631911 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
4631812 |
T |
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| Q |
121 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631811 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtat |
4631712 |
T |
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| Q |
221 |
ttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
271 |
Q |
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| T |
4631711 |
ttctttttcgaatttcacattctccttttcttccatcaccaatggccctat |
4631661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 4667907 - 4667683
Alignment:
| Q |
21 |
aacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattat |
120 |
Q |
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||||||| |||||| ||||||| || |||||||| || | || ||||||||||||||||||||||| ||||||||||||| ||| | |||||| | | |
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| T |
4667907 |
aacagctcatatgatgttttagctgtaaattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactct |
4667808 |
T |
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| Q |
121 |
tctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtat |
220 |
Q |
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| T |
4667807 |
tctctgtcattgaaccacaaa------tcatatctgtaaaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtat |
4667714 |
T |
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| Q |
221 |
ttctttttcgaatttcacattctccttttct |
251 |
Q |
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| T |
4667713 |
atcattttccgatttcacattctcattttct |
4667683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 18924874 - 18925115
Alignment:
| Q |
30 |
tatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatca |
129 |
Q |
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||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||| |||||||| |||| |||| |||||||| |||||||||||| |
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| T |
18924874 |
tatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacatggatgacaccaaactattctctatca |
18924973 |
T |
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| Q |
130 |
ttgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttc |
229 |
Q |
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|||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| || ||||| ||||||||||| ||||| |
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| T |
18924974 |
ttgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttc |
18925073 |
T |
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| Q |
230 |
gaatttcacattctccttttcttccatcaccaatggccctat |
271 |
Q |
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|| ||||||||||| ||| ||||| || | ||| ||||||| |
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| T |
18925074 |
caacttcacattctcatttccttccgtcgctaatagccctat |
18925115 |
T |
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