View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5145_low_17 (Length: 280)
Name: NF5145_low_17
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 38695585 - 38695683
Alignment:
| Q |
173 |
aatgttattttgcaagagacgttttctttctctaagttttctgcaagacttatttgtatcattaaaggttttcctttatactcaacctattcttcatct |
271 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38695585 |
aatgttattttgcaagagaccttttctttctctaaattttctgcaagacttatttgtatcattaaaggttttcctttatactcaacttattcttcatct |
38695683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 38695488 - 38695548
Alignment:
| Q |
75 |
gcgaaaagtagaagaatcataatagttagctgcaacaaactagcgtccactcaccaaaaca |
135 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
38695488 |
gcgaaaagtagaagaatcataatagttagttgcaacaaactagtgtccactcaccaaaaca |
38695548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 38695441 - 38695484
Alignment:
| Q |
2 |
ccttctgctcaacattatattcgcacgggtactcaaaatctctt |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38695441 |
ccttctgctcaacattatattcgcacgggtactcaaaatctctt |
38695484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 36625880 - 36625967
Alignment:
| Q |
31 |
tactcaaaatctcttaatattt-aatagttaaattaattgataaagc-gaaaagtagaagaatcataatagttagctgcaacaaacta |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| || |||||||||| ||| |||||| |||| || || |||||| |
|
|
| T |
36625880 |
tactcaaaatctcttaatatttaaatagttaaattaattaatagcgctaaaaagtagaaaaattataataattagttggaataaacta |
36625967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University