View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_2 (Length: 535)
Name: NF5145_low_2
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 123 - 293
Target Start/End: Original strand, 42575894 - 42576064
Alignment:
| Q |
123 |
atctaacacagacaaaaaaccacccaaggaactagagacactccaacgaaaagctgcaactccaccctgcaataaagaaagaaaagtagaacccatagga |
222 |
Q |
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| T |
42575894 |
atctaacacagacaaaaaaccacccaaggaactagagacactccaacgaaaagctgcaactccaccctgcaataaagaaagaaaagtagaacccatagga |
42575993 |
T |
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| Q |
223 |
tgggcaagatggacaaccgccccacaccccccaccgaatagcaacagaactcacaccaccacaagacttta |
293 |
Q |
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| T |
42575994 |
tgggcaagatggacaaccgccccacaccccccaccgaatagcaacagaactcacaccaccacaagacttta |
42576064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 42576168 - 42576269
Alignment:
| Q |
417 |
atttgataacatattcatatattgggaaaaacttgatatgtattttgcaatttaatagatccattttaaaatactgataatgcgaggactaactaatgca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42576168 |
atttgataacatattcatatattgggaaaaacttgatatgcattttgcaatttaatagatccattttaaaatactgataatgcaaggactaactaatgca |
42576267 |
T |
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| Q |
517 |
ac |
518 |
Q |
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|| |
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| T |
42576268 |
ac |
42576269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 42576062 - 42576117
Alignment:
| Q |
361 |
ttaggaattactttcagactaaaaacttcaccctgttcactaaatgcaagacgagg |
416 |
Q |
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| T |
42576062 |
ttaggaattactttcaggctaaaaacttcaccctgttcactaaatgcaagacgagg |
42576117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 42575799 - 42575827
Alignment:
| Q |
28 |
ataaacaaaacaggtacaaagtcagaatc |
56 |
Q |
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| T |
42575799 |
ataaacaaaacaggtacaaagtcagaatc |
42575827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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