View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_20 (Length: 272)
Name: NF5145_low_20
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 46677674 - 46677924
Alignment:
| Q |
18 |
gctttagtagccgtgaatgaagtaacgacgcagataatcaatgagaatgatgacttctatgccatcaagcccatggagtatagccgttttctaataatct |
117 |
Q |
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| T |
46677674 |
gctttagtagccgtgaatgaagtaacgacgcagataatcaatgagaataatgacttctatgccatcaagcccatggagtatagccgttttctaataatct |
46677773 |
T |
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| Q |
118 |
cattgggcaccggaacaccaaagaatgaacaaaagtttgattcaaaattggcagcaaaatggggtcttttggattggttaactcacggtggttccactcc |
217 |
Q |
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| T |
46677774 |
cattgggcaccggaacaccaaagaatgaacaaaagtttgattcaaaattggcagcaaaatggggtcttttggattggttaactcacggtggttccactcc |
46677873 |
T |
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| Q |
218 |
cttaattgatatctttagtcaatcctctggagatatggatgatgtccatct |
268 |
Q |
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| T |
46677874 |
cttaattgatatctttagtcaatcctctggagatatggttgatttccatct |
46677924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 46681635 - 46681872
Alignment:
| Q |
31 |
tgaatgaagtaacgacgcagataatcaatgagaatgatgacttctatgccatcaagcccatggagtatagccgttttctaataatctcattgggcaccgg |
130 |
Q |
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| T |
46681635 |
tgaatgaagtaacaaatcagataattaatcagaataatgacttctatgccatcaagccaatggaatatagccgtttcttgataatctcactgggaactgg |
46681734 |
T |
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| Q |
131 |
aacaccaaagaatgaacaaaagtttgattcaaaattggcagcaaaatggggtcttttggattggttaactcacggtggttccactcccttaattgatatc |
230 |
Q |
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| T |
46681735 |
gacacccaagaatgaacaaaagttcaatgcgaaaatggcagcaaaatggggtctgctggattggttaactcacggtggttcgactcccttaatcgacatg |
46681834 |
T |
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| Q |
231 |
tttagtcaatcctctggagatatggatgatgtccatct |
268 |
Q |
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| T |
46681835 |
tttagtcaatcatcagctgatatggttgatttccatct |
46681872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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