View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5145_low_21 (Length: 271)
Name: NF5145_low_21
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_21 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 31401322 - 31401574
Alignment:
| Q |
19 |
atggagttggattctgtgagttatggcatagaagaatgggacacccatcatctaagataactagtatgttgcctgatgtaactgagaaagatattgatag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31401322 |
atggagttggattctgtgagttatggcatagaagaatgggacacccatcatctaagataactagtatgttgcctgatgtaactgaaaaagatattgatag |
31401421 |
T |
|
| Q |
119 |
tagaataaagacttgtgatgtttgttttaaggccaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31401422 |
tagaataaagacttgtgatgtttgttttaaggccaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
31401521 |
T |
|
| Q |
219 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgctgtttactt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31401522 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgctgtttactt |
31401574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 13711052 - 13711304
Alignment:
| Q |
19 |
atggagttggattctgtgagttatggcatagaagaatgggacacccatcatctaagataactagtatgttgcctgatgtaactgagaaagatattgatag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13711052 |
atggagttggattctgtgagttatggcatagaagaatgggacacccatcatctaagataactagtatgttgcctgatgtaactgaaaaagatattgatag |
13711151 |
T |
|
| Q |
119 |
tagaataaagacttgtgatgtttgttttaaggccaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13711152 |
tagaataaagacttgtgatgtttgttttaaggccaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
13711251 |
T |
|
| Q |
219 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgctgtttactt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13711252 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgttgtttactt |
13711304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 27688610 - 27688862
Alignment:
| Q |
19 |
atggagttggattctgtgagttatggcatagaagaatgggacacccatcatctaagataactagtatgttgcctgatgtaactgagaaagatattgatag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27688610 |
atggagttggattctgtgagttatggcatagaagaatgggacatccatcatctaagataactagtatgttgcctgatgtaactgaaaaagatattgatag |
27688709 |
T |
|
| Q |
119 |
tagaataaagacttgtgatgtttgttttaaggccaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27688710 |
tagaataaagacttgtgatgtttgttttaaggctaaacaaataaaagaatcatttttgttgagtgacaataatgcaaagaattgttttgatttgattcac |
27688809 |
T |
|
| Q |
219 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgctgtttactt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27688810 |
tgtgatttatggggaccttacagaacatatgcctcttgtggtgctgtttactt |
27688862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University