View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_27 (Length: 240)
Name: NF5145_low_27
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 4823997 - 4823780
Alignment:
| Q |
23 |
gaccagatgactatttactcacagtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttcc |
122 |
Q |
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| T |
4823997 |
gaccagatgactatttactcacagtttggagtagtatgagcaactgaaggaagtagtaagaggctcctccaattgtagcatacttcaacttctcttttcc |
4823898 |
T |
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| Q |
123 |
ttcaacgtctgagaaatcatcgtcttttgaacgactaaagcctccaactaaccatccaagatttctgtagcctccattatacagctttgaagttgctgtc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4823897 |
ttcaacgtctgagaaatcatcgtcttttgaacgactaaagcctccaactaaccatccaagatttctgtaacctccattatacagctttgaagttgctgtc |
4823798 |
T |
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| Q |
223 |
attgacctgaatagtcac |
240 |
Q |
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|||||||||||||||||| |
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| T |
4823797 |
attgacctgaatagtcac |
4823780 |
T |
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