View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5145_low_34 (Length: 208)

Name: NF5145_low_34
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5145_low_34
NF5145_low_34
[»] chr2 (22 HSPs)
chr2 (16-99)||(25217553-25217636)
chr2 (16-99)||(44465519-44465602)
chr2 (16-99)||(42894669-42894752)
chr2 (16-99)||(17474577-17474660)
chr2 (16-99)||(38065356-38065439)
chr2 (16-99)||(33452221-33452304)
chr2 (16-99)||(34517395-34517478)
chr2 (16-99)||(41510208-41510291)
chr2 (16-98)||(5507712-5507794)
chr2 (16-99)||(39447455-39447532)
chr2 (16-99)||(41854682-41854765)
chr2 (16-85)||(30763942-30764011)
chr2 (16-99)||(27670788-27670871)
chr2 (41-99)||(15994898-15994956)
chr2 (48-99)||(32187663-32187714)
chr2 (16-99)||(38308611-38308694)
chr2 (22-87)||(32069030-32069095)
chr2 (44-97)||(33440291-33440344)
chr2 (48-99)||(16750223-16750274)
chr2 (41-99)||(11457269-11457327)
chr2 (41-99)||(17133042-17133100)
chr2 (16-99)||(41202968-41203048)
[»] chr4 (36 HSPs)
chr4 (16-98)||(7931956-7932038)
chr4 (16-99)||(48318848-48318931)
chr4 (16-99)||(34973164-34973247)
chr4 (16-99)||(19835820-19835903)
chr4 (20-99)||(25752227-25752306)
chr4 (16-99)||(38536471-38536554)
chr4 (16-98)||(46440057-46440139)
chr4 (16-86)||(52089554-52089624)
chr4 (20-95)||(2505819-2505894)
chr4 (16-99)||(38417091-38417174)
chr4 (16-99)||(54631276-54631359)
chr4 (16-98)||(29822880-29822962)
chr4 (16-99)||(6003457-6003540)
chr4 (16-99)||(18050973-18051056)
chr4 (16-95)||(40703964-40704043)
chr4 (16-95)||(47456905-47456984)
chr4 (16-98)||(25538763-25538845)
chr4 (16-72)||(52089485-52089541)
chr4 (16-99)||(6228597-6228680)
chr4 (16-99)||(25491179-25491262)
chr4 (23-85)||(49001353-49001415)
chr4 (16-85)||(8106694-8106763)
chr4 (16-85)||(23524087-23524156)
chr4 (43-99)||(14473999-14474055)
chr4 (48-95)||(53836072-53836119)
chr4 (16-99)||(53893810-53893893)
chr4 (41-99)||(37222289-37222347)
chr4 (41-86)||(27741910-27741955)
chr4 (16-80)||(41322895-41322959)
chr4 (16-99)||(17932921-17933004)
chr4 (16-99)||(31582214-31582296)
chr4 (16-99)||(48095646-48095729)
chr4 (16-77)||(32442110-32442171)
chr4 (16-85)||(49397311-49397380)
chr4 (44-84)||(372249-372289)
chr4 (47-99)||(32601169-32601221)
[»] chr3 (25 HSPs)
chr3 (16-86)||(43472765-43472835)
chr3 (16-99)||(34821127-34821210)
chr3 (16-97)||(28873298-28873379)
chr3 (16-99)||(2358406-2358489)
chr3 (16-99)||(35142365-35142448)
chr3 (16-99)||(50716545-50716628)
chr3 (16-99)||(50796219-50796302)
chr3 (16-99)||(51258696-51258779)
chr3 (16-99)||(47302311-47302394)
chr3 (41-99)||(500970-501028)
chr3 (16-97)||(3902592-3902673)
chr3 (16-99)||(4394271-4394354)
chr3 (41-95)||(35345697-35345751)
chr3 (16-97)||(3351852-3351933)
chr3 (16-85)||(38977546-38977615)
chr3 (16-99)||(29048622-29048705)
chr3 (44-99)||(33439507-33439562)
chr3 (16-99)||(51540411-51540494)
chr3 (16-99)||(46622579-46622662)
chr3 (24-82)||(45711886-45711944)
chr3 (22-99)||(14828700-14828777)
chr3 (41-86)||(34009891-34009936)
chr3 (16-99)||(41300902-41300985)
chr3 (16-78)||(3938474-3938536)
chr3 (16-86)||(47739730-47739800)
[»] chr7 (25 HSPs)
chr7 (16-99)||(9152083-9152166)
chr7 (16-85)||(3304549-3304618)
chr7 (19-99)||(42925424-42925504)
chr7 (16-99)||(37518047-37518130)
chr7 (16-99)||(47202779-47202862)
chr7 (16-99)||(19818672-19818754)
chr7 (16-99)||(24041981-24042063)
chr7 (16-98)||(36629495-36629577)
chr7 (16-97)||(19225384-19225465)
chr7 (16-99)||(8155191-8155274)
chr7 (16-99)||(43737374-43737457)
chr7 (16-86)||(31643332-31643402)
chr7 (19-99)||(42864885-42864966)
chr7 (42-85)||(33573846-33573889)
chr7 (41-96)||(43186102-43186157)
chr7 (16-77)||(33151494-33151555)
chr7 (16-99)||(7115053-7115136)
chr7 (41-99)||(16278330-16278388)
chr7 (16-85)||(25612907-25612976)
chr7 (33-97)||(2816880-2816944)
chr7 (41-85)||(47239516-47239560)
chr7 (44-99)||(36468323-36468378)
chr7 (41-99)||(8214378-8214436)
chr7 (41-99)||(48705783-48705841)
chr7 (51-99)||(26554947-26554995)
[»] chr6 (15 HSPs)
chr6 (16-98)||(2539743-2539825)
chr6 (16-99)||(3717066-3717149)
chr6 (16-95)||(5639153-5639232)
chr6 (16-99)||(24604145-24604228)
chr6 (16-85)||(17264701-17264770)
chr6 (16-99)||(21514815-21514897)
chr6 (19-99)||(4508086-4508166)
chr6 (16-99)||(237090-237173)
chr6 (16-99)||(2813006-2813089)
chr6 (16-86)||(14587358-14587428)
chr6 (44-99)||(5699918-5699973)
chr6 (49-99)||(1945366-1945416)
chr6 (49-99)||(9905388-9905438)
chr6 (65-99)||(7423240-7423274)
chr6 (63-99)||(7416125-7416161)
[»] chr8 (18 HSPs)
chr8 (16-99)||(11698100-11698183)
chr8 (16-99)||(8885236-8885319)
chr8 (16-99)||(42280675-42280758)
chr8 (16-86)||(28917067-28917137)
chr8 (16-99)||(3094977-3095060)
chr8 (16-99)||(34853620-34853703)
chr8 (51-99)||(4259466-4259514)
chr8 (16-99)||(31519678-31519759)
chr8 (16-99)||(36980861-36980944)
chr8 (41-99)||(24627797-24627854)
chr8 (16-82)||(40328190-40328256)
chr8 (52-97)||(9073847-9073892)
chr8 (41-98)||(40994987-40995044)
chr8 (41-99)||(33472294-33472352)
chr8 (50-99)||(28219014-28219063)
chr8 (41-99)||(31234605-31234664)
chr8 (41-85)||(41530899-41530942)
chr8 (16-88)||(44106515-44106587)
[»] chr5 (29 HSPs)
chr5 (16-99)||(6156985-6157068)
chr5 (16-99)||(14112119-14112202)
chr5 (16-99)||(32841755-32841838)
chr5 (16-98)||(38692567-38692650)
chr5 (16-98)||(26898588-26898670)
chr5 (16-99)||(37183565-37183648)
chr5 (16-86)||(12464915-12464985)
chr5 (16-99)||(26190106-26190189)
chr5 (16-99)||(27212957-27213040)
chr5 (16-99)||(31928909-31928992)
chr5 (20-85)||(7884452-7884517)
chr5 (16-99)||(15799479-15799562)
chr5 (16-99)||(31221123-31221206)
chr5 (16-99)||(39525030-39525113)
chr5 (16-99)||(40619769-40619852)
chr5 (41-99)||(16429258-16429316)
chr5 (16-98)||(20891866-20891948)
chr5 (16-86)||(38372555-38372625)
chr5 (43-99)||(11185971-11186027)
chr5 (16-96)||(38871925-38872005)
chr5 (41-88)||(8739077-8739124)
chr5 (16-99)||(15958003-15958086)
chr5 (16-99)||(33487865-33487948)
chr5 (41-99)||(26093738-26093796)
chr5 (41-85)||(5456335-5456379)
chr5 (16-65)||(24203501-24203550)
chr5 (41-98)||(28445284-28445340)
chr5 (61-98)||(42289755-42289792)
chr5 (63-99)||(27158385-27158421)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-98)||(174146-174228)
[»] chr1 (24 HSPs)
chr1 (16-99)||(27795122-27795205)
chr1 (16-99)||(40907718-40907801)
chr1 (16-97)||(45046636-45046717)
chr1 (16-99)||(38885505-38885588)
chr1 (16-99)||(41584449-41584532)
chr1 (16-98)||(44572885-44572967)
chr1 (18-99)||(18583328-18583409)
chr1 (16-85)||(34006553-34006622)
chr1 (16-99)||(28866414-28866497)
chr1 (16-99)||(42546260-42546342)
chr1 (16-86)||(49786560-49786630)
chr1 (16-97)||(6223539-6223619)
chr1 (16-99)||(52744627-52744710)
chr1 (41-99)||(41584365-41584423)
chr1 (44-98)||(49677783-49677837)
chr1 (16-99)||(24472612-24472695)
chr1 (41-99)||(800677-800734)
chr1 (40-85)||(8704316-8704361)
chr1 (40-95)||(27400069-27400124)
chr1 (44-99)||(33611194-33611249)
chr1 (41-99)||(9445973-9446030)
chr1 (61-99)||(40650488-40650526)
chr1 (41-86)||(43319082-43319126)
chr1 (16-88)||(23443030-23443102)
[»] scaffold0010 (1 HSPs)
scaffold0010 (16-82)||(140778-140844)
[»] scaffold0508 (1 HSPs)
scaffold0508 (16-99)||(3177-3260)
[»] scaffold0137 (1 HSPs)
scaffold0137 (17-99)||(9282-9363)
[»] scaffold0182 (1 HSPs)
scaffold0182 (50-99)||(23299-23348)
[»] scaffold0564 (1 HSPs)
scaffold0564 (44-98)||(4691-4745)
[»] scaffold0016 (1 HSPs)
scaffold0016 (41-99)||(205894-205951)
[»] scaffold0027 (1 HSPs)
scaffold0027 (51-99)||(141778-141826)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 25217636 - 25217553
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  25217636 aaaaattcaaggaccatgactcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacc 25217553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 44465602 - 44465519
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| | | ||||||||    
T  44465602 aaaaattcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcttttagacc 44465519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 42894669 - 42894752
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  42894669 aaaaattcaaggaccatgactcccttagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 42894752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 17474660 - 17474577
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||  ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  17474660 aaaaattcaaggaccatgactcccttagaagaaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 17474577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 38065439 - 38065356
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| |||||||| | |||||| |||||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  38065439 aaaaattcaaggatcatgactcctgtagaagagacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 38065356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 33452304 - 33452221
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||||||   || ||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  33452304 aaaaaatcaaggaccatgactcccataaaagcgacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 33452221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 34517395 - 34517478
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   ||||||||||||||||||| | ||||| |||||||||||||||||| | ||||||||||    
T  34517395 aaaaattcaaggatcatgactcccatagaagggacttcttacgggattccgcacctcaaaatccaaaattccatcgtttagacc 34517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 41510291 - 41510208
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||  ||||||| |||||||| || ||||| |||||||||||||||||||  | ||||||||||    
T  41510291 aaaaattcaaggaccatgactctcttagaaggaacttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacc 41510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 5507712 - 5507794
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||| ||||||||   ||||||  |||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  5507712 aaaaattcaaggatcatgactcccatagaagaaacttcttatggaactccgcccctcaaaatccaaaattccatcgtttagac 5507794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39447455 - 39447532
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||      |||||||||||||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  39447455 aaaaattcaaggaccatg------ctagaagggacttcttacgggactccgcccctcaaaatccaaaattacatcgtttagacc 39447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 41854765 - 41854682
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| |||||| |   ||||||| |||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  41854765 aaaaattcaaggatcatgacaccattagaaggaacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 41854682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 30763942 - 30764011
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||| |||| || || ||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  30763942 aaaaaatcaaagatcaagactctcatagaagggacttcttacgggactccgcccctcaaaatccaaaatt 30764011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27670788 - 27670871
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| |||||||||||   |||||| ||| ||||| || ||||||||||||||||| |||||||| | ||||||||||    
T  27670788 aaaaattcaacgaccatgactcccttagaagagacctcttatgggactccgcccctcaaaattcaaaattccatcgtttagacc 27670871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 15994956 - 15994898
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  15994956 tagaatggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 15994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 32187714 - 32187663
Alignment:
Q  48 gacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||| ||||| |||||||||||||||||||| | ||||||||||    
T  32187714 gacttcttacgggactccacccctcaaaatccaaaattccatcgtttagacc 32187663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 38308694 - 38308611
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   ||||||||| || |||  | |||||||||||||||||||||||||| |  |||||||||    
T  38308694 aaaaattcaaggatcatgactcccttagaagggaatttttattggactccgcccctcaaaatccaaaattccattgtttagacc 38308611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 32069095 - 32069030
Alignment:
Q  22 tcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattct 87  Q
    ||||||| ||||||||| |||| || |||||||||| |  ||||| ||||||||||||||||||||    
T  32069095 tcaaggatcatgactctcctagtagtgacttcttacaggtctccgtccctcaaaatccaaaattct 32069030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 33440344 - 33440291
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    |||||||||||||||| |||||||| |||||||| |||||||| | ||||||||    
T  33440344 aagggacttcttacgggactccgcctctcaaaattcaaaattccatcgtttaga 33440291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 16750274 - 16750223
Alignment:
Q  48 gacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| ||| | |||||||||||||||||||||||||| | ||||||||||    
T  16750274 gacttcctacaggactccgcccctcaaaatccaaaattccatcgtttagacc 16750223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 11457269 - 11457327
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||  |||||| ||||||||||  ||||||| | ||||||||||    
T  11457269 tagaagggacttcttacgagactccgtccctcaaaatttaaaattccatcgtttagacc 11457327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 17133042 - 17133100
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| ||||| |||||| |||||| ||||||||||||||||||  | ||||||||||    
T  17133042 tagaagagactttttacgggactccgaccctcaaaatccaaaatttcatcgtttagacc 17133100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 41203048 - 41202968
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||   |||||||  |||||| |||| ||||| | ||||||||| |||||||||||||||  | ||||||||||    
T  41203048 aaaaattcaagga---tgactctcgtagaagagactccttacaggactccgcccatcaaaatccaaaatttcatcgtttagacc 41202968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 7931956 - 7932038
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  7931956 aaaaattcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagac 7932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 48318931 - 48318848
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||| | ||||||||||    
T  48318931 aaaaattcaaggaccatgactctcctggaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 48318848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 34973164 - 34973247
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||| |  |||||||||    
T  34973164 aaaaattcaaggaccatgactctcctaaaagggacttctttcgggactccgcccctcaaaatccaaaattccattgtttagacc 34973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 19835820 - 19835903
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||| |||||||||||||||||||||||||| |  |||||||||    
T  19835820 aaaaattcaagtaccatgactcccctaaaagggacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 19835903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 25752306 - 25752227
Alignment:
Q  20 attcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||   |||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  25752306 attcaaggaccatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 25752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38536471 - 38536554
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||| |||| | ||||| |||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  38536471 aaaaattcaaggaccataactcctttagaaaggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 38536554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 46440139 - 46440057
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||||  | |||||||||    
T  46440139 aaaaattcaaggaccatgactcccaaagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagac 46440057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 52089554 - 52089624
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||||||||| ||||   ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52089554 aaaaattcaaggaccataactcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattc 52089624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 2505894 - 2505819
Alignment:
Q  20 attcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    ||||||||||||||||||  | |||||||||||||||||| | || ||||||||||||||||||||||| ||||||    
T  2505894 attcaaggaccatgactccccaagaagggacttcttacgggattctgcccctcaaaatccaaaattctatcgttta 2505819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38417091 - 38417174
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||||| | ||||||||| |||||||||||||||  | ||||||||||    
T  38417091 aaaaattcaaggaccatgactcacgtagaagggacttcttacaggactccgcccttcaaaatccaaaatttcatcgtttagacc 38417174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 54631359 - 54631276
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||| ||||||||||||| ||||||| ||||||||| |||||||| | ||||||||||    
T  54631359 aaaaattcaaggaccatgactcccatagaaaggacttcttacgggactccgcacctcaaaatacaaaattccatcgtttagacc 54631276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 29822880 - 29822962
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||   ||||||||||||| ||||| |||| |||||||||||| |||||||| | |||||||||    
T  29822880 aaaaattcaaggaccatgactcccgtagaagggacttcctacgggactctgcccctcaaaattcaaaattccatcgtttagac 29822962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 6003540 - 6003457
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| ||||||||||    || ||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  6003540 aaaaattcaaagaccatgacttccataaaaggggcttcttacgggactccgcccctcaaaatccaaaattctattgtttagacc 6003457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 18051056 - 18050973
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||||||   ||||||| |||| |||||| | |||||||||||||||||||||||| | ||||||||||    
T  18051056 aaaaaatcaaggaccatgactcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacc 18050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40703964 - 40704043
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    |||||||||||||||||||||    ||||||| ||||||||||| |||||||||||||||||| ||||||| | ||||||    
T  40703964 aaaaattcaaggaccatgacttcattagaaggaacttcttacgggactccgcccctcaaaatctaaaattccatcgttta 40704043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 47456905 - 47456984
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    ||||| ||||||| || ||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||| | ||||||    
T  47456905 aaaaaatcaaggatcaagactcctctagaagagacttcttatggaactccgtccctcaaaatccaaaattccatcgttta 47456984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 25538845 - 25538763
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||| |||||||| ||||||||   |||||| |||||||||||| |||||||||||||||||||||||| | | |||||||||    
T  25538845 aaaatttcaaggaacatgactcccttagaagagacttcttacgggactccgcccctcaaaatccaaaataccatcgtttagac 25538763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 52089485 - 52089541
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctc 72  Q
    ||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||    
T  52089485 aaaaattcaaggaccataactctcatagaagggacttcttacgggactccgcccctc 52089541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 6228680 - 6228597
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||| ||||||||||   ||||||| ||||||||| | ||||| |||||||||||||||||||| |  |||||||||    
T  6228680 aaaaattcaagaaccatgactcccgtagaaggaacttcttacaggactcctcccctcaaaatccaaaattccattgtttagacc 6228597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 25491262 - 25491179
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||| |||||||||||||||||   |||||||||||||| | || | |||| ||||||||||||||||||| | ||||||||||    
T  25491262 aaaagttcaaggaccatgactcccttagaagggacttctcaagggattccgtccctcaaaatccaaaattccatcgtttagacc 25491179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 49001415 - 49001353
Alignment:
Q  23 caaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    |||||| ||||||||   ||||||||||||||||||| ||||||| |||||||||||||||||    
T  49001415 caaggatcatgactcccttagaagggacttcttacgggactccgctcctcaaaatccaaaatt 49001353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 8106694 - 8106763
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||| ||||||||   ||||||| ||||||||||| |||||||| ||||||||| ||||||    
T  8106694 aaaaattcaaggatcatgactcccgtagaaggaacttcttacgggactccgcctctcaaaatcaaaaatt 8106763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 23524087 - 23524156
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||||||||||    ||||||||||| ||| || ||| |||||||||||||||||||||    
T  23524087 aaaaattcaaggaccatgactcccgaagaagggacttattatgggacttcgcccctcaaaatccaaaatt 23524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 14474055 - 14473999
Alignment:
Q  43 gaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||| |||||||||||||| ||||||||||  | ||||||||||    
T  14474055 gaagggacttcttacgggactccgcccctcaagatccaaaatttcatcgtttagacc 14473999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 53836119 - 53836072
Alignment:
Q  48 gacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    |||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  53836119 gacttcttacgggactccgtccctcaaaatccaaaattctatcgttta 53836072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 53893893 - 53893810
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||  |||||||| ||||   |||||||||||||||| ||  ||||||||||||||||||||||||  | ||||||||||    
T  53893893 aaaaatttcaggaccatcactcccgtagaagggacttcttatgggtctccgcccctcaaaatccaaaatttcatcgtttagacc 53893810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 37222289 - 37222347
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||| ||||||||||  ||||| |||||||||||||||||||| | ||||||||||    
T  37222289 tagaaggaacttcttacgagactcctcccctcaaaatccaaaattccaacgtttagacc 37222347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 27741955 - 27741910
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||| |||||||| || ||||||||||||||||||||||||||    
T  27741955 tagaaggaacttcttatgggactccgcccctcaaaatccaaaattc 27741910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 41322959 - 41322895
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatcca 80  Q
    ||||||||| ||| || || |||| |||||| |||||||||||| | ||||||||||||||||||    
T  41322959 aaaaattcacggatcaagattcttgtagaagagacttcttacgggattccgcccctcaaaatcca 41322895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 17933004 - 17932921
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||| | |||||||| |  | |||||| ||||||||||||||||| |  |||||||||    
T  17933004 aaaaattcaaggaccatgactcccttagaaagaacttcttaagagattccgcctctcaaaatccaaaattccatagtttagacc 17932921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 31582296 - 31582214
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| |||||||| |    |||||||||||||||  |||  |||||||||||||||||||||||| | ||||||||||    
T  31582296 aaaaattcaaagaccatgatttccttagaagggacttcttttggat-tccgcccctcaaaatccaaaattccatcgtttagacc 31582214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 48095729 - 48095646
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| || ||||| | ||||||||||||||| ||| ||||||||  ||||||||| |||||| | || |||||||    
T  48095729 aaaaaatcaaggatcaagactcatgtagaagggacttcttgcgggactccgcctttcaaaatccgaaattccatcgattagacc 48095646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 32442110 - 32442171
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaat 77  Q
    ||||||||||||||||||||||   |||||| ||||||||| || | | |||||||||||||    
T  32442110 aaaaattcaaggaccatgactcccttagaagagacttcttatgggatttcgcccctcaaaat 32442171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 49397311 - 49397380
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||||||||||    |||||  |||||||| || | || ||||||||||||||||||||    
T  49397311 aaaaattcaaggaccatgactccctaagaagaaacttcttatgggattcggcccctcaaaatccaaaatt 49397380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 372249 - 372289
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaat 84  Q
    |||||||||||||||| ||||| ||||||||||| ||||||    
T  372249 aagggacttcttacgggactcctcccctcaaaattcaaaat 372289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 32601169 - 32601221
Alignment:
Q  47 ggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||  || |||||||| ||||||||||||||||| | ||||||||||    
T  32601169 ggacttcttgggggactccgccgctcaaaatccaaaattccatcgtttagacc 32601221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 43472835 - 43472765
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43472835 aaaaattcaaggaccatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaattc 43472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 34821210 - 34821127
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||| | ||||||||||    
T  34821210 aaaaattcaaggaccatgactctcatagaagggacttcttacgggagtccgcccctcaaaatccaaaattccatcgtttagacc 34821127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 28873298 - 28873379
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    ||||||||||||| ||||||||  ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  28873298 aaaaattcaaggaacatgactcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttaga 28873379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2358489 - 2358406
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||| ||||||| |  |||||||||    
T  2358489 aaaaattcaaggaccatgactcccctagaagggacttcttacgggactacgcccctcaaaatctaaaattccattgtttagacc 2358406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 35142365 - 35142448
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||||||||||||||||  |||||||||| |||||||||||||| | ||||||||||    
T  35142365 aaaaattcaaggaccatgactcccgtagaagggacttcttacggggctccgcccctaaaaatccaaaattccatcgtttagacc 35142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 50716545 - 50716628
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| |||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||| | | ||||||||    
T  50716545 aaaaactcaaggaccatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 50796302 - 50796219
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| |||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||| | | ||||||||    
T  50796302 aaaaactcaaggaccatgactcctctagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacc 50796219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 51258696 - 51258779
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   ||||||||||||||||||| |||||||||||||||||||||||||  | ||||||||||    
T  51258696 aaaaattcaaggatcatgactcccgtagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 51258779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 47302311 - 47302394
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   ||||||||||||||||||| |||| ||||||||||||||||||||| |  |||||||||    
T  47302311 aaaaattcaaggatcatgactcccatagaagggacttcttacgggactctgcccctcaaaatccaaaattccattgtttagacc 47302394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 501028 - 500970
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  501028 tagaagggacttcttacggcactccgcccctcaaaatccaaaattccatcgtttagacc 500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 3902673 - 3902592
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    |||||||||||||||||||| |   ||||||| | ||||||||| |||||||||||||||||||||||||| | ||||||||    
T  3902673 aaaaattcaaggaccatgacacccttagaaggaatttcttacgggactccgcccctcaaaatccaaaattcaatcgtttaga 3902592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 4394271 - 4394354
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||||||   ||||||| |||| |||||| | |||||||||||||||||||||||| | ||||||||||    
T  4394271 aaaaaatcaaggaccatgactcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacc 4394354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 35345751 - 35345697
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||    
T  35345751 tagaagggacttctaacgggactccgcccctcaaaatccaaaattccaccgttta 35345697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 3351933 - 3351852
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    ||||||||| |||| |||||||   |||||||||||||||| || |||||||||||||||||| ||||||| | ||||||||    
T  3351933 aaaaattcagggacaatgactcccgtagaagggacttcttatgggactccgcccctcaaaatctaaaattccatcgtttaga 3351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 38977615 - 38977546
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||| ||||||   |||||||||||||||  || |||||||||||||||||||||||||    
T  38977615 aaaaattcaaggaccgtgactcccgtagaagggacttcttgtgggactccgcccctcaaaatccaaaatt 38977546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 29048622 - 29048705
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| || |||||   ||||| |||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  29048622 aaaaaatcaaggatcaagactcccgtagaaaggacttattacgggactccgcccctcaaaatccaaaattccatcgtttagacc 29048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 33439507 - 33439562
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||    
T  33439507 aagggacttgttacggaactccgccccacaaaatccaaaattccatcgtttagacc 33439562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 51540494 - 51540411
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||||||||||| | || | || |||||||||||||||||| || | ||||||||||    
T  51540494 aaaaattcaaggaccatgactcccttagaagggacttctcatgggattctgcccctcaaaatccaaaactccatcgtttagacc 51540411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 46622662 - 46622579
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||| ||||   |||||   | ||||||||| ||||||||||||| |||||||||||| | ||||||||||    
T  46622662 aaaaattcaaggaccatcactcccatagaatcaatttcttacgggactccgcccctcagaatccaaaattccatcgtttagacc 46622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 45711944 - 45711886
Alignment:
Q  24 aaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaa 82  Q
    ||||| || ||||||  ||||||||||||||||||| ||||| ||||||||||||||||    
T  45711944 aaggatcaagactctcttagaagggacttcttacgggactccacccctcaaaatccaaa 45711886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 14828777 - 14828700
Alignment:
Q  22 tcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||| || || || |||||||| |||||||||| | ||||||||  |||||||||||||||| | ||||||||||    
T  14828777 tcaaggatcaagattcctctagaagagacttcttacaggactccgcctttcaaaatccaaaattccatcgtttagacc 14828700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 34009936 - 34009891
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||    
T  34009936 tagaagggacttcttacgtgactccgccccccaaaatccaaaattc 34009891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 41300902 - 41300985
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||| ||||    |||||  ||||||||||| ||||||||| |||||||| ||||||| | ||||||||||    
T  41300902 aaaaaatcaaggaccattactcccgcagaagaaacttcttacgggactccgcccatcaaaatcaaaaattccatcgtttagacc 41300985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3938474 - 3938536
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatc 78  Q
    ||||||||||||||||||||||   || |||| |||||||||   ||||||||||||||||||    
T  3938474 aaaaattcaaggaccatgactcccttataaggaacttcttacaagactccgcccctcaaaatc 3938536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 47739800 - 47739730
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||| ||| ||||||   |||||| ||||||||  || ||||||||||||||||| ||||||||    
T  47739800 aaaaattcaagaaccgtgactcccatagaagagacttctttggggactccgcccctcaaaattcaaaattc 47739730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 9152083 - 9152166
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  9152083 aaaaaatcaaggaccatgactcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 9152166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 3304618 - 3304549
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  3304618 aaaaaatcaaggaccatgactcctctagaagggacttcttacgggactccgcccctcaaaatccaaaatt 3304549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 42925504 - 42925424
Alignment:
Q  19 aattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||   |||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  42925504 aattcaaggaccatgactcccttagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 42925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 37518130 - 37518047
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||    
T  37518130 aaaaattcaaggaccatgactcccatagaagagacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 37518047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 47202779 - 47202862
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||||||||||||| || |||||||||||||||||||||||||| |  |||||||||    
T  47202779 aaaaattcaaggaccatgactcccatagaagggacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacc 47202862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 19818672 - 19818754
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||||||| ||||| |||||| ||||||||||||| | ||||||||||    
T  19818672 aaaaattcaaggaccatgactcccgtagaagggacttcttacgggactccacccctc-aaatccaaaattccatcgtttagacc 19818754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 24042063 - 24041981
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||| | |||  |||||||||||||| ||||||||||||||||||||||| || | ||||||||||    
T  24042063 aaaaattcaaggaccatgactcctgtagt-gggacttcttacgggactccgcccctcaaaatccaaaactccatcgtttagacc 24041981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 36629495 - 36629577
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||   ||||||||||||||||||| |||||  || |||||||||||||||| | |||||||||    
T  36629495 aaaaattcaaggaccatgactcccgtagaagggacttcttacgggactccatccttcaaaatccaaaattccatcgtttagac 36629577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 19225465 - 19225384
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    ||||||||||||| ||||||||   ||||||| ||||||||| | |||||||||||||||||||||||||| | ||||||||    
T  19225465 aaaaattcaaggaacatgactcccatagaaggaacttcttacaggactccgcccctcaaaatccaaaattccatcgtttaga 19225384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 8155191 - 8155274
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   || |||| ||||||||||| |||||||||||||||||||||||||| |  |||||||||    
T  8155191 aaaaattcaaggatcatgactcccgtacaaggaacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 8155274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 43737374 - 43737457
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||| |||||||  || |||||||||||||||||| ||||||| | ||||||||||    
T  43737374 aaaaattcaaggaccatgactcccttagaaggaacttcttgtgggactccgcccctcaaaatctaaaattccatcgtttagacc 43737457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 31643332 - 31643402
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||||||||||||||   ||||||| |||||||| || ||||| ||||||||||||||||||||    
T  31643332 aaaaattcaaggaccatgactcccttagaaggaacttcttatgggactccacccctcaaaatccaaaattc 31643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 42864966 - 42864885
Alignment:
Q  19 aattcaaggaccatgactcttctagaagg-gacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||   ||||| | ||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  42864966 aattcaaggaccatgactcccttagaaagagacttcttatgggactccgcccctcaaaatccaaaattcaatcgtttagacc 42864885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 33573889 - 33573846
Alignment:
Q  42 agaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  33573889 agaagggacttcttacgggactccgcccctcaaaatccaaaatt 33573846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 43186102 - 43186157
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttag 96  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||    
T  43186102 tagaagggacttcttacgggactccgcccctaaaaatccaaaattccatcgtttag 43186157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 33151494 - 33151555
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaat 77  Q
    ||||||||||||||||||||||   ||||||||||||||||||| ||||| ||| |||||||    
T  33151494 aaaaattcaaggaccatgactcccttagaagggacttcttacgggactccacccttcaaaat 33151555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 7115136 - 7115053
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| || |||||   ||||||||||||||||||| |||||  ||||||||||||||||||| |  |||||||||    
T  7115136 aaaaaatcaaggatcaagactcccttagaagggacttcttacgggactccttccctcaaaatccaaaattccattgtttagacc 7115053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 16278330 - 16278388
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||  | ||||||||||    
T  16278330 tagaagggacttcttacgggactccgcacatcaaaatccaaaatttcatcgtttagacc 16278388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 25612976 - 25612907
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||| ||||||| || |||||  ||||||| |||||||||  |||| ||||||||||||||||||||||    
T  25612976 aaaaaatcaaggatcaagactcccctagaagagacttcttagagaacaccgcccctcaaaatccaaaatt 25612907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 2816944 - 2816880
Alignment:
Q  33 gactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    |||||| ||| |||||||||||||||| ||||  ||||| |||||| |||||||||||| |||||    
T  2816944 gactctcctaaaagggacttcttacgggactcgaccccttaaaatctaaaattctaccgattaga 2816880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 47239560 - 47239516
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  47239560 tagaagggacttcttacgggacttcgcctctcaaaatccaaaatt 47239516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 36468378 - 36468323
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||| |||||||||||||| || |||||||  | ||||||||||    
T  36468378 aagggacttcttacgggactccgcccctcaagattcaaaatttcatcgtttagacc 36468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 8214436 - 8214378
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||| | | ||||||||    
T  8214436 tagaagggacttcttacgagacttcgcccctcacaatccaaaattccatcttttagacc 8214378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 48705841 - 48705783
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||  | ||||||||||||||| |||||||||  | ||||||||||    
T  48705841 tagaagggacttcttataggactccgcccctcaaattccaaaatttcatcgtttagacc 48705783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 26554995 - 26554947
Alignment:
Q  51 ttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| || |||| ||||||||||||||||||||| | ||||||||||    
T  26554995 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacc 26554947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 2539743 - 2539825
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  2539743 aaaaattcaaggaccatgactctcatagaagtgacttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagac 2539825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 3717149 - 3717066
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||| |||  ||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  3717149 aaaaattcaaggaccatggctcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccactgtttagacc 3717066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5639153 - 5639232
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    |||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||||| | ||||||    
T  5639153 aaaaattcaaggaccatgactcctttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgttta 5639232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 24604228 - 24604145
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||   ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  24604228 aaaaattcaaggatcatgactcccttagaagggacttcttgcggaactccgcctctcaaaatccaaaattccaccgtttagacc 24604145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17264701 - 17264770
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||| || ||||||||||||||||||    
T  17264701 aaaaattcaaggaccatgactcccctagaagggacttcttacgggacttcgtccctcaaaatccaaaatt 17264770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 21514897 - 21514815
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||| ||||   ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  21514897 aaaaattcaaggatcat-actcccttagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 21514815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 4508166 - 4508086
Alignment:
Q  19 aattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||    ||||| ||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  4508166 aattcaaggaccatgactcccacagaagagacttcttaagggactccgcccctcaaaatccaaaattccatcgtttagacc 4508086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 237090 - 237173
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| |||||||||| || ||   |||||||| |||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  237090 aaaaaatcaaggaccaagaatcccttagaagggtcttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2813089 - 2813006
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||| |||||||||| || ||||| |||||||||||||||||||  | ||||||||||    
T  2813089 aaaaattcaaggaccatgactcccttagaatggacttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacc 2813006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 14587428 - 14587358
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    |||||||||||||||| |||||   ||||||| ||||||||||| |||||||| |||||||||||||||||    
T  14587428 aaaaattcaaggaccaagactcccttagaaggaacttcttacgggactccgccactcaaaatccaaaattc 14587358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 5699918 - 5699973
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  5699918 aaggaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 5699973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 1945416 - 1945366
Alignment:
Q  49 acttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  1945416 acttcttacgggactccgcccctcaaaatccaaaattccaacgtttagacc 1945366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 9905388 - 9905438
Alignment:
Q  49 acttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  9905388 acttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 9905438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 7423240 - 7423274
Alignment:
Q  65 cgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||| ||||||||||||    
T  7423240 cgcccctcaaaatccaaaattcaaccgtttagacc 7423274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 7416125 - 7416161
Alignment:
Q  63 tccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||| | ||||||||||    
T  7416125 tccgcccctcaaaatccaaaattcaatcgtttagacc 7416161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 11698183 - 11698100
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  11698183 aaaaattcaaggaccatgactcccatagaagggacgtcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 11698100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 8885319 - 8885236
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||||| | |||||||||||||||||||||||||| | | ||||||||    
T  8885319 aaaaattcaaggaccatgactcccgtagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcatttagacc 8885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 42280758 - 42280675
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||| |||||||||||| ||||  |||||||||||||||||| | |||||||||||||||||||||||||| | ||||||||||    
T  42280758 aaaagttcaaggaccataactcccctagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 42280675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 28917067 - 28917137
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||||||||||||||   ||||||| |||||||| || ||||||||||||||||||||||||||    
T  28917067 aaaaattcaaggaccatgactcccttagaaggaacttcttatgggactccgcccctcaaaatccaaaattc 28917137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 3094977 - 3095060
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||| ||||||| ||||||  ||||| |||||||||||||||||||  | ||||||||||    
T  3094977 aaaaattcaaggaccatgactcccataggagggactacttacgcgactccacccctcaaaatccaaaatttcatcgtttagacc 3095060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 34853620 - 34853703
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||| |||||||||  || |||||||||||||||||  ||||||| | ||||||||||    
T  34853620 aaaaattcaaggaccatgactcccttagaaaggacttcttctgggactccgcccctcaaaataaaaaattccatcgtttagacc 34853703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 4259514 - 4259466
Alignment:
Q  51 ttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  4259514 ttcttacgggactccgcccctcaaaatccaaaattctatcctttagacc 4259466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 31519759 - 31519678
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||| |   |||||||||| |||||||| ||||  |||||||||||||||||||| |  |||||||||    
T  31519759 aaaaattcaaggaccatgacacccttagaagggacgtcttacgggactc--cccctcaaaatccaaaattccattgtttagacc 31519678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 36980861 - 36980944
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| || |||||  |||||||||||||||||| | ||||||| ||||||||| |||||| | | ||||||||||    
T  36980861 aaaaaatcaaggatcaagactcccctagaagggacttcttacaggactccgctcctcaaaattcaaaatcccatcgtttagacc 36980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 24627797 - 24627854
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||| | ||||||||    
T  24627797 tagaagagacttcttacagaactccgccc-tcaaaatccaaaattctatcatttagacc 24627854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 40328190 - 40328256
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaa 82  Q
    ||||||||||||| ||||||||   || |||  ||||||||||| ||||||||||||||||||||||    
T  40328190 aaaaattcaaggatcatgactcccgtaaaagaaacttcttacgggactccgcccctcaaaatccaaa 40328256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 9073847 - 9073892
Alignment:
Q  52 tcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||||    
T  9073847 tcttacgggactcagcccctcaaaatccaaaattctatcgtttaga 9073892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 40994987 - 40995044
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||| || |||||| |||||||| ||||||||||||||||| | |||||||||    
T  40994987 tagaagggatttattacgggactccgcctctcaaaatccaaaattccatcgtttagac 40995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 33472294 - 33472352
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| |||||||||||| ||| ||||||||||||| |||||||  | ||||||||||    
T  33472294 tagaagagacttcttacgggactacgcccctcaaaattcaaaatttcatcgtttagacc 33472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 28219063 - 28219014
Alignment:
Q  50 cttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| |||  |||||||||||||||||||| || ||||||||||    
T  28219063 cttcttacgggactatgcccctcaaaatccaaaattttatcgtttagacc 28219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 31234664 - 31234605
Alignment:
Q  41 tagaagggacttcttacg--gaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||  | ||||||||| |||||||||||||||| | ||||||||||    
T  31234664 tagaagggacttcttacgcgggactccgccc-tcaaaatccaaaattccatcgtttagacc 31234605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 41530899 - 41530942
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||    
T  41530899 tagaagagacttcttacgggactccg-ccctcaaaatccaaaatt 41530942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 44106515 - 44106587
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattcta 88  Q
    ||||| ||||||||||||||||   ||||||   ||||||| || |||| | |||||||||||||||||||||    
T  44106515 aaaaaatcaaggaccatgactcccttagaagttccttcttatgggactctgtccctcaaaatccaaaattcta 44106587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 6156985 - 6157068
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  6156985 aaaaattcaaggaccatgactcccgtagtagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 6157068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 14112119 - 14112202
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  14112119 aaaaattcaaggaccatgaatcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 14112202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 32841838 - 32841755
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||  ||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  32841838 aaaaattcaaggatcatgactcccctagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 32841755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 38692650 - 38692567
Alignment:
Q  16 aaaaattcaaggaccatgactcttctag-aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||   ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  38692650 aaaaattcaaggaccatgactcccttaggaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagac 38692567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 26898670 - 26898588
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||  | |||||||||    
T  26898670 aaaaattcaaggaccatgactcctgtagaagggacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagac 26898588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 37183648 - 37183565
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   |||||||||| |||||||| |||||||||||||||||||||||||| | | ||||||||    
T  37183648 aaaaattcaaggaccatgactcccgtagaagggacatcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 37183565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 12464985 - 12464915
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    |||||||||||||||||||||| | ||||||| ||||||||||| |||| |||||||||||||||||||||    
T  12464985 aaaaattcaaggaccatgactcctatagaaggaacttcttacgggactctgcccctcaaaatccaaaattc 12464915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 26190189 - 26190106
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| |||||||||||  |||||||| |||||||| || |||||||||||||||||||||||||| |  |||||||||    
T  26190189 aaaaattcaacgaccatgactcccctagaaggaacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacc 26190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27212957 - 27213040
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| | |||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||| |  |||||||||    
T  27212957 aaaaattcaacgtccatgactcccctagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacc 27213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 31928992 - 31928909
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||||||||||||  | ||||||||||    
T  31928992 aaaaattcaaggaccatgactcccttagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacc 31928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 7884452 - 7884517
Alignment:
Q  20 attcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||| ||||||    
T  7884452 attcaaggaccatgactcccgtagaagagacttcttacggaactccgcccctcaaaatctaaaatt 7884517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 15799479 - 15799562
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||| |||  ||||||||||||||  | || ||||| |||||||||||||||||||| | ||||||||||    
T  15799479 aaaaattcaaggaccatgcctcccctagaagggacttccaatgggactccacccctcaaaatccaaaattccatcgtttagacc 15799562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 31221206 - 31221123
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||| |||||    ||||||||||||||||||  |||||||||||||||||||||||||  | ||||||||||    
T  31221206 aaaaattcaaggaccgtgacttccatagaagggacttcttacgagactccgcccctcaaaatccaaaatttcatcgtttagacc 31221123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39525030 - 39525113
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||| |||||||  || |||| ||||||||||||||||||||| | ||||||||||    
T  39525030 aaaaattcaaggaccatgactcccttagaaggaacttcttgtgggactctgcccctcaaaatccaaaattccatcgtttagacc 39525113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 40619852 - 40619769
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| ||||||||    |||||| ||||||||||| |||||||||||||||||||||||||| | | ||||||||    
T  40619852 aaaaattcaaggatcatgactccaaaagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 40619769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 16429258 - 16429316
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||    
T  16429258 tagaagggacttcttacgggactccgcccctcaaaattcaaaattttatcgtttagacc 16429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 20891866 - 20891948
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||| ||||||||  ||| |||||||||||||||| | |||| || |||||||||||||||| | |||||||||    
T  20891866 aaaaattcaaggatcatgactcccctacaagggacttcttacgggattccgtccttcaaaatccaaaattccatcgtttagac 20891948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 38372555 - 38372625
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    |||||||||||||||||||||    |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  38372555 aaaaattcaaggaccatgacttccttagaagagacttcttacgggactccacccctcaaaatccaaaattc 38372625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 11186027 - 11185971
Alignment:
Q  43 gaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||  ||||||||||||||||| |||||||| | ||||||||||    
T  11186027 gaagggacttcttacgatactccgcccctcaaaattcaaaattcaatcgtttagacc 11185971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 38871925 - 38872005
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttag 96  Q
    ||||||||||||||| ||||||    ||||| |||||||||||| |||  |||||| |||||||||||||||| |||||||    
T  38871925 aaaaattcaaggaccgtgactcccaaagaagagacttcttacgggactttgccccttaaaatccaaaattctatcgtttag 38872005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 8739124 - 8739077
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattcta 88  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  8739124 tagaaggaacttattacgggactccgcccctcaaaatccaaaattcta 8739077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 15958003 - 15958086
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||| ||||   |||||| ||||||||| || ||| |||| ||||||||||||||||  | ||||||||||    
T  15958003 aaaaattcaaggaccataactcccttagaagcgacttcttatgggacttcgcctctcaaaatccaaaatttcatcgtttagacc 15958086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33487865 - 33487948
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| ||||||||   |||||||||||||||  || || |||||||| |||||||||||||| | ||||||||||    
T  33487865 aaaaagtcaaggatcatgactcccttagaagggacttcttttgggaccccgcccctaaaaatccaaaattccatcgtttagacc 33487948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 26093738 - 26093796
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||| | | ||||||||    
T  26093738 tagaggggacttcttacgggactcctcccctcaaaatccaaaattccatcatttagacc 26093796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 5456335 - 5456379
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||    
T  5456335 tagaagggatttcttacgggactccgcctctcaaaatccaaaatt 5456379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 24203550 - 24203501
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactcc 65  Q
    ||||||||||||||||||||||   |||||||||||||||| || |||||    
T  24203550 aaaaattcaaggaccatgactcccttagaagggacttcttatgggactcc 24203501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 28445340 - 28445284
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||| | |||||||||    
T  28445340 tagaagggacttcttatgatactccgccc-tcaaaatccaaaattccatcgtttagac 28445284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 42289755 - 42289792
Alignment:
Q  61 actccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  42289755 actctgcccctcaaaatccaaaattctatcgtttagac 42289792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 27158385 - 27158421
Alignment:
Q  63 tccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||| | ||||||||||    
T  27158385 tccgcccctcaaaatccaaaattccatcgtttagacc 27158421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 174228 - 174146
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||| |||||||| | |||||||||    
T  174228 aaaaattcaaggaccatgactcctgtagaagggacttcttacgagactccgcccctcaaaattcaaaattccatcgtttagac 174146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27795122 - 27795205
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| |||||||||| |||||| |||||||||| | |||||||||||||||||||||||||  | ||||||||||    
T  27795122 aaaaattcaaggatcatgactcttgtagaagagacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagacc 27795205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 40907801 - 40907718
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||| |||||||||  || ||||||||||||| || |||||||||||||||||||||||||| | ||||||||||    
T  40907801 aaaaattcaaggatcatgactctcataaaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 40907718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 45046717 - 45046636
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    ||||||||||||||||||||||   |||||||||||||||| |  |||||||||||||||||||||||||| | ||||||||    
T  45046717 aaaaattcaaggaccatgactcccttagaagggacttcttatgagactccgcccctcaaaatccaaaattccatcgtttaga 45046636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38885505 - 38885588
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||| ||||| ||||| || |||||||||||||| || ||||||||||||||||| |||||||| | ||||||||||    
T  38885505 aaaaattcaagcaccataactctcctggaagggacttcttatgggactccgcccctcaaaattcaaaattccatcgtttagacc 38885588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 41584532 - 41584449
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||| |||| ||||||| |  |||||||||    
T  41584532 aaaaattcaaggaccatgactcccatagaagggacttcttacgggactccgcccctcacaatctaaaattccattgtttagacc 41584449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 44572967 - 44572885
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    ||||||||||||||||||||||   |||||| ||||||||| || ||||||||| ||||||| |||||||||| |||||||||    
T  44572967 aaaaattcaaggaccatgactcccatagaagagacttcttaggggactccgcccatcaaaattcaaaattctatcgtttagac 44572885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 18583409 - 18583328
Alignment:
Q  18 aaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||| |||||   |||||| |||||||||||| |||||||||||||||||||||||||| |  |||||||||    
T  18583409 aaattcaaggaccacgactcccatagaagagacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 18583328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 34006553 - 34006622
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    ||||||||||||| ||||||||   ||||||||||||||||||| |||||| ||||||||||||||||||    
T  34006553 aaaaattcaaggatcatgactcccgtagaagggacttcttacgggactccgtccctcaaaatccaaaatt 34006622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 28866497 - 28866414
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||| ||||||   ||||||| ||||| ||||| |||||||||||||||||||||||||  | ||||||||||    
T  28866497 aaaaattcaaggaccgtgactcccttagaaggcacttcctacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 28866414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 42546260 - 42546342
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||| ||||||||||||||   ||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||    
T  42546260 aaaaatttaaggaccatgactcccttagaaggaacttcttacgggactccg-ccctcaaaatccaaaattccatcgtttagacc 42546342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 49786560 - 49786630
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    ||||||||||||||||||||||   |||||| ||||||||| |  ||||||||||||||||||||||||||    
T  49786560 aaaaattcaaggaccatgactcccgtagaagagacttcttatgagactccgcccctcaaaatccaaaattc 49786630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 6223619 - 6223539
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttaga 97  Q
    ||||||||||||| ||||||||   |||||| ||||||||||||| | ||||||||||||||||||||||| | ||||||||    
T  6223619 aaaaattcaaggatcatgactcccttagaagagacttcttacgga-caccgcccctcaaaatccaaaattccatcgtttaga 6223539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 52744710 - 52744627
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||  |||||||||||||||||   ||||| || |||||||| |||||||  | ||||||||||    
T  52744710 aaaaattcaaggaccatgactctcatagaagggacttcttacaagactccacctctcaaaattcaaaatttcatcgtttagacc 52744627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 41584423 - 41584365
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |  |||||||||    
T  41584423 tagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacc 41584365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 49677783 - 49677837
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||| ||||||||||||||||| |||||||| | |||||||||    
T  49677783 aagggacttcttacgggactccgcccctcaaaattcaaaattccatcgtttagac 49677837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 24472695 - 24472612
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||| || |||||   ||||||||||||||| ||| ||||||||| |||||||||||||||  | ||||||||||    
T  24472695 aaaaaatcaaggatcaagactcccatagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacc 24472612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 800734 - 800677
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||    
T  800734 tagaagggacttcttacgggactctgccc-tcaaaatccaaaattccatcgtttagacc 800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 8704361 - 8704316
Alignment:
Q  40 ctagaagggacttcttacggaactccgcccctcaaaatccaaaatt 85  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||    
T  8704361 ctagaagggacttcttacgggactacacccctcaaaatccaaaatt 8704316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 27400124 - 27400069
Alignment:
Q  40 ctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgttta 95  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||| || ||||||    
T  27400124 ctagaaggaacttcttacaggactccgcccctcaaaatcgaaaattttatcgttta 27400069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 33611249 - 33611194
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||| ||| || ||||||||||||||||||| |  |||||||||    
T  33611249 aagggacttcttacgggactacgtccctcaaaatccaaaattccattgtttagacc 33611194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 9446030 - 9445973
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||  | ||||||||||    
T  9446030 tagaagggatttcttacgggactccgccc-tcaaaatccaaaatttcatcgtttagacc 9445973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 40650526 - 40650488
Alignment:
Q  61 actccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  40650526 actccgcccctcaaaatccaaaattccatcgtttagacc 40650488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 43319126 - 43319082
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattc 86  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||    
T  43319126 tagaagagacttcttacgggactccg-ccctcaaaatccaaaattc 43319082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23443030 - 23443102
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattcta 88  Q
    ||||||||||||||||| ||||   |||||| |||||||| |   |||| || ||||||||||||||||||||    
T  23443030 aaaaattcaaggaccataactcccatagaagagacttcttgcacgactctgctcctcaaaatccaaaattcta 23443102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 140778 - 140844
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaa 82  Q
    ||||||||||||||||||||||   || |||||||||||||||| ||| ||||||||||||||||||    
T  140778 aaaaattcaaggaccatgactcccataaaagggacttcttacgggacttcgcccctcaaaatccaaa 140844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 3260 - 3177
Alignment:
Q  16 aaaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||||| |||||||||||| |   |||||||||||||||| || || || |||||||||||||||||||| | ||||||||||    
T  3260 aaaaatttaaggaccatgacccccttagaagggacttcttatgggaccccacccctcaaaatccaaaattccatcgtttagacc 3177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 9363 - 9282
Alignment:
Q  17 aaaattcaaggaccatgactcttctagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||||||| ||||||   ||||||| ||||||||||| ||||||||||||||||| |||||| | | ||||||||||    
T  9363 aaaattcaaggaccttgactcccttagaagg-acttcttacgggactccgcccctcaaaattcaaaataccatcgtttagacc 9282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 23299 - 23348
Alignment:
Q  50 cttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  23299 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 23348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 4691 - 4745
Alignment:
Q  44 aagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagac 98  Q
    |||||||||||||||| ||||| |||||||||||||||||||  | |||||||||    
T  4691 aagggacttcttacgggactccacccctcaaaatccaaaattacatcgtttagac 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 205951 - 205894
Alignment:
Q  41 tagaagggacttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||| | | ||||||||    
T  205951 tagaaaggacttcttacgggactccg-ccctcaaaatccaaaattccatcatttagacc 205894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 141826 - 141778
Alignment:
Q  51 ttcttacggaactccgcccctcaaaatccaaaattctaccgtttagacc 99  Q
    |||||| || |||| ||||||||||||||||||||| | ||||||||||    
T  141826 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacc 141778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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