View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_4 (Length: 443)
Name: NF5145_low_4
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 21720783 - 21721051
Alignment:
| Q |
18 |
gtttagggtttataacacaaca-aaacacacgcaagtgaagttcaaagagaagagaggcgtaac-----acaaaaatgagttcaaagagaagaataagct |
111 |
Q |
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| T |
21720783 |
gtttagggtttataacacaagagaaacacacg--agtgaagttcaaagagaagagaggcgtaacataacacaaaaatgagttcaaagagaagaataagct |
21720880 |
T |
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| Q |
112 |
tagtagcaggttcatacgaacgtttcatatggggtttcaatctcaaccctaacacccaaaccctaacccctgttttctcctacccatctcatctctccct |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21720881 |
tagtagcaggttcatacgaacgtttcatttggggtttcaatctcaaccctaacacccaaaccctaacccctgttttctcctacccatctcatctctcact |
21720980 |
T |
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| Q |
212 |
aatcaaaaccgtcgctgtttccaactccgtcgtcgcatccggcggctccgacgacacaatccatctctacg |
282 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21720981 |
catcaaaaccgtcgccgtttccaactccgtcgtcgcatccggcggctccgacgacacaatccatctctacg |
21721051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 349 - 443
Target Start/End: Original strand, 21721118 - 21721212
Alignment:
| Q |
349 |
tttactccccacctaacctcccttttcctcgtaacctcgtctccgctgacgctgacggttcccttgcaatcttcgatgccgatggtttcgttcat |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21721118 |
tttactccccacctaacctcccttttcctcgtaacctcgtctcagctgacgctgacggttcccttgcaatcttcgatgccgatggtttcgttcat |
21721212 |
T |
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