View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5145_low_5 (Length: 419)
Name: NF5145_low_5
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 10062128 - 10062516
Alignment:
| Q |
13 |
aaaatcagtctcttgaagatgatcaagaagaaaatgtgtcacaagttttctttaagattaaggaaaatgaaattggtgacatgaaaattgaatcaccaaa |
112 |
Q |
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| T |
10062128 |
aaaatcaatctcttgaagatgatcaagaagaaaatgtgtcacaagttttctttaagattaaggaaaatgaaattggtgacatgaaaattgaatcaccaaa |
10062227 |
T |
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| Q |
113 |
gtcaagtagtagcaaagagtttattacttctccaagaatgattattgagaaagatgattttggtgacaaagaagaggattcaagttgggaagaagagaac |
212 |
Q |
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| T |
10062228 |
gtcaagtagtagcaaagagtttattacttctccaagaatgattattgagaaagatgattttggtgacaaagaagaggattcaagttgggaagaagagaat |
10062327 |
T |
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| Q |
213 |
aatagtggtttcaatttatggaaatggagtcttagtggtgttggtgctatttgcacttttggtgttgttgctgcttctatttgtgttttgttctttggaa |
312 |
Q |
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| T |
10062328 |
aatagtggtttcaatttatggaaatggagtcttagtggtgttggtgctatttgcacttttggtgttgttgctgcttctatttgtgttttgttctttggaa |
10062427 |
T |
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| Q |
313 |
gccaacaaaggaaaaaacttcagaaggatcagaagaataggttccaaatttatgctgatgacaaggttagtaaatttcttggttttcaa |
401 |
Q |
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| T |
10062428 |
gccaacaaaggaaaaaacttcagaaggatcagaagaataggttccaaatttatgctgatgacaaggttagtaaaattcttggttttcaa |
10062516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 33263172 - 33263115
Alignment:
| Q |
268 |
cttttggtgttgttgctgcttctatttgtgttttgttctttggaagccaacaaaggaa |
325 |
Q |
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| T |
33263172 |
cttttggtgttgctgctgccacaatttgtgtcttgttctttggaagtcaacaaaggaa |
33263115 |
T |
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