View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5145_low_7 (Length: 413)
Name: NF5145_low_7
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_7 |
 |  |
|
| [»] scaffold0233 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 34714437 - 34714838
Alignment:
| Q |
1 |
gtggaggtggtgaaggcagaggttgtttgtgtgggaggatgagttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34714437 |
gtggaggtggtgaaggcagaggttgtttgtgtgggaggatgagttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaa |
34714536 |
T |
 |
| Q |
101 |
cctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34714537 |
cctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgc |
34714636 |
T |
 |
| Q |
201 |
ggttcggttaaatcgtcttatcatttattcttacattgtaatattttggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34714637 |
ggttcggttaaatcgtcttatcatttattcttacattgtaatattttggttctgtctggcattttatctatagatggatggacatttctgcggtcgtccc |
34714736 |
T |
 |
| Q |
301 |
tctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34714737 |
tctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagta |
34714836 |
T |
 |
| Q |
401 |
tt |
402 |
Q |
| |
|
|| |
|
|
| T |
34714837 |
tt |
34714838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 14436454 - 14436385
Alignment:
| Q |
119 |
gtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttcc |
188 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
14436454 |
gtggatgttgcatctctttggcataaggatgtccccttgaaggtagtgttgtttgcatggcggttattcc |
14436385 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 7155272 - 7155319
Alignment:
| Q |
310 |
gccagatcattttaatcaattcagttatagtggtggtaccgcaaaggt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7155272 |
gccagatcattttaatcaattcagttatagtggtggtatcgcaaaggt |
7155319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 2682351 - 2682430
Alignment:
| Q |
117 |
cggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg |
196 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| | ||| | ||||||| ||||||||||| ||||| |||||| |
|
|
| T |
2682351 |
cggtggctgtttcctctctttggcataaggatgtccctcttaagattttgttgttcgcttggcggttattccgagacagg |
2682430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 17293286 - 17293212
Alignment:
| Q |
106 |
tattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
||||| ||| ||||||| || || |||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
17293286 |
tattgattctgcggtggcagtgtcttctctttggcataaagatgtccctctgaaggttgtgttgtttgcttggcg |
17293212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 27104882 - 27104935
Alignment:
| Q |
137 |
tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg |
190 |
Q |
| |
|
|||||||||||||| ||| | ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
27104882 |
tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccgg |
27104935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 27146691 - 27146744
Alignment:
| Q |
137 |
tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg |
190 |
Q |
| |
|
|||||||||||||| ||| | ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
27146691 |
tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccgg |
27146744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 12687791 - 12687843
Alignment:
| Q |
132 |
ctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttg |
184 |
Q |
| |
|
|||| |||||||||||||| ||| | ||||| ||||||||||||||||||||| |
|
|
| T |
12687791 |
ctctatggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttg |
12687843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 44 - 402
Target Start/End: Original strand, 27008763 - 27009121
Alignment:
| Q |
44 |
ttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcata |
143 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27008763 |
ttggaatcatctcatgctttctctgttcatagtgtttacaatttcctaactattcaacctcctattgcttcagcggtggttgtttcatctctttggcata |
27008862 |
T |
 |
| Q |
144 |
aggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaata |
243 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27008863 |
aggatgtccctctgaaggcagtgttgtttgcttggcggttgttccgagacagggtgcggttcggttgaatcgtcttatcatttattcttacattgtaata |
27008962 |
T |
 |
| Q |
244 |
ttttggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggt |
343 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27008963 |
ttttggttctgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccggatcattttaatcaattcagttatagtggt |
27009062 |
T |
 |
| Q |
344 |
ggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagtatt |
402 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27009063 |
ggtaccgtaaaggttatttggtttgctactatttgctttcaatattataagttagtatt |
27009121 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 193 - 358
Target Start/End: Original strand, 30505448 - 30505614
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgc |
291 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| |||||||||||||||||||| || | ||||||| ||||||| ||||||| | ||| ||||||||| |
|
|
| T |
30505448 |
cagggtgcggtttggttgaattgtcttatcatttgttcttacattgtaatatttttgggtctgtctggtattttatttatagatagctgggcatttctgc |
30505547 |
T |
 |
| Q |
292 |
ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30505548 |
ggtcgtccctctttatgtgccggatcattttaatcaatttagttatagtggtggtaccgcaaaggtt |
30505614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 30505231 - 30505379
Alignment:
| Q |
44 |
ttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcata |
143 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||| ||||| | ||||||||||||| |||| |
|
|
| T |
30505231 |
ttggaaacatctcatgctttttgtgttcatagtctttataatttcctaactattcaacctcatattacttcactggtggctatttcatctctttgacata |
30505330 |
T |
 |
| Q |
144 |
aggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
30505331 |
aggatgtccctctgaaggttgtgttgtttgtttggtggttgttccggga |
30505379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 27708514 - 27708398
Alignment:
| Q |
231 |
ttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaat |
329 |
Q |
| |
|
|||||||||||| |||| || |||||||| ||||| || ||||||||| ||| |||||||||||| ||||||| ||| ||| ||||||| || ||||| |
|
|
| T |
27708514 |
ttacattgtaatttttttgggtttgtctgccatttaatttatagatggttgggcatttctgcggttgtccctcagtatatgctggatcattctattcaat |
27708415 |
T |
 |
| Q |
330 |
tcagttatagtggtggt |
346 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27708414 |
tcagttatagtggtggt |
27708398 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 27708714 - 27708626
Alignment:
| Q |
98 |
caacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt |
186 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||| |||||||||||||| ||| |||| || | |||| |||||||| ||||||| |
|
|
| T |
27708714 |
caacctcctattgctacatcggtgcccgtttcatctctctggcataaggatgttcctttgaaagttgcgttgcttgcttggtggttgtt |
27708626 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 9840576 - 9840662
Alignment:
| Q |
269 |
tatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaag |
355 |
Q |
| |
|
||||||||| | ||||||||||| || ||||||| | | || | |||||||||| ||||||| |||||||||||||| | |||||| |
|
|
| T |
9840576 |
tatagatggctcgacatttctgcagttgtccctcaatttatgtcggatcattttattcaattctgttatagtggtggtccggcaaag |
9840662 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 13880336 - 13880382
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | ||||||||||| |
|
|
| T |
13880336 |
ctttggcataaggatgtccttatgaaggttgtgatttttgcttggcg |
13880382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 14020461 - 14020507
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| | ||||||||||| |
|
|
| T |
14020461 |
ctttggcataaggatgtccttatgaaggttgtgatttttgcttggcg |
14020507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 20947957 - 20948006
Alignment:
| Q |
308 |
gtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggt |
357 |
Q |
| |
|
||||||||||||||||| ||||| |||| | ||||||||||| ||||||| |
|
|
| T |
20947957 |
gtgccagatcattttaaccaatttagttttggtggtggtaccacaaaggt |
20948006 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 39117024 - 39117077
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttc |
187 |
Q |
| |
|
||||||||||||||||||||| | || || ||||||||||||| ||| |||||| |
|
|
| T |
39117024 |
ctttggcataaggatgtccctttaaaagtggtgttgtttgctttgcgtttgttc |
39117077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 22653021 - 22653186
Alignment:
| Q |
194 |
agggtgcggttcggttaaatcgtcttatcatttattcttacattgtaata-ttttggttttgtctggcattttatctatagatggatggacatttctgcg |
292 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| || |||||||||||| |||||| | |||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
22653021 |
agggtgcggttcggttgaatcgtccgctcatttgttattacattgtaattgttttgggtcggtctggcattttatttatagatggttgtgtatttctgcg |
22653120 |
T |
 |
| Q |
293 |
gtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt |
358 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22653121 |
gtcgtccctctttacgtgcaagatcattttattcaattcagttatagtggtggtaccgcaaaggtt |
22653186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 22652810 - 22652951
Alignment:
| Q |
51 |
catctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgt |
150 |
Q |
| |
|
||||||||||||| | |||| ||||||||| |||||| ||||| | |||||||| |||||| | | ||||||||||||||||||||||||| |||||| |
|
|
| T |
22652810 |
catctcatgctttttctgttcgtagtgtttacaatttcttaactgtgcaacctccaattgctacatcagtggttgtttcatctctttggcatatggatgt |
22652909 |
T |
 |
| Q |
151 |
ccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
| | | ||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
22652910 |
tcttcttaaggttgtgttgtttacttggcggttgttctggga |
22652951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 20509990 - 20510057
Alignment:
| Q |
125 |
gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
20509990 |
gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccggga |
20510057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 25130950 - 25130897
Alignment:
| Q |
117 |
cggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgt |
170 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25130950 |
cggtggttgcgtcatctcattggcataaggatgtccctctgaaggttgtgttgt |
25130897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 5726741 - 5726796
Alignment:
| Q |
131 |
tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt |
186 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| ||| |||||| |||||||||||| |
|
|
| T |
5726741 |
tctctctggcataaggatgttcctctgaaggtggtgctgtttgattggcggttgtt |
5726796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 20510126 - 20510225
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatggatggacatttctgc |
291 |
Q |
| |
|
|||| |||||||||||| ||||||| |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| ||||| ||| ||| ||||| |
|
|
| T |
20510126 |
caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgc |
20510225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 30972915 - 30972808
Alignment:
| Q |
73 |
tagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgttt |
172 |
Q |
| |
|
||||| ||||||||| || ||| |||||||||| ||| ||| ||||| || || ||||||||| |||| ||||||||| ||||||| || |||||| |
|
|
| T |
30972915 |
tagtgcttataatttgctcacttttcaacctccgtttgtttctatggtggcggtgtcctctctttggaataaagatgtccctttgaaggtcgttttgttt |
30972816 |
T |
 |
| Q |
173 |
gcttggcg |
180 |
Q |
| |
|
|||||||| |
|
|
| T |
30972815 |
gcttggcg |
30972808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 9830991 - 9831035
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttgg |
178 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
9830991 |
ctttggcataaggatgtccctctgaaggttgttttatttgcttgg |
9831035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 19315518 - 19315394
Alignment:
| Q |
68 |
gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||| | ||||| |||| |
|
|
| T |
19315518 |
gttcgtagtgtttataatttcctaactactcaacctcatattgcttctacggtggttgtgtcatttctttggcataaggatgtccctcttaaggttgtgt |
19315419 |
T |
 |
| Q |
168 |
tgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
19315418 |
tgtttgcttggcaattgttccggga |
19315394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 19315325 - 19315271
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt |
247 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19315325 |
cagggtgcggttctgttgaatcgtcttatcatttaatcttacattgtaatatttt |
19315271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 25325677 - 25325782
Alignment:
| Q |
80 |
tataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggc |
179 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||| |||||| | ||||||| |||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
25325677 |
tataattttctaacttttcaacctcctattgcttcacgggtagttgttccca-tctttggaataaggatgttcctccgaaggtggtgttgtttgcttggc |
25325775 |
T |
 |
| Q |
180 |
ggttgtt |
186 |
Q |
| |
|
||||||| |
|
|
| T |
25325776 |
ggttgtt |
25325782 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12863990 - 12863923
Alignment:
| Q |
125 |
gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
12863990 |
gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccggga |
12863923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 704854 - 704716
Alignment:
| Q |
220 |
atcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatca |
318 |
Q |
| |
|
|||||||||||||||||||| || |||| || | | |||||||| |||||||||||| | | |||||| |||| ||| | ||||||| || || || |
|
|
| T |
704854 |
atcatttattcttacattgtcatgtttttgggtccatttggcatttaatctatagatggctaggcatttcagcggctgtctcgttttatgtaccggacca |
704755 |
T |
 |
| Q |
319 |
ttttaatcaattcagttatagtggtggtaccgcaaaggt |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
704754 |
ttttaatcaattcagttatagtagtggtatctcaaaggt |
704716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12832015 - 12831948
Alignment:
| Q |
125 |
gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | ||||| || |||||||||||| | ||||||||||| |
|
|
| T |
12832015 |
gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggtgtttgttccggga |
12831948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 25325859 - 25325911
Alignment:
| Q |
195 |
gggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt |
247 |
Q |
| |
|
||||| ||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
25325859 |
gggtgtggttcggttgaatcctcccatcatttattcttacattgtaatatttt |
25325911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 12863854 - 12863755
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatggatggacatttctgc |
291 |
Q |
| |
|
|||| |||||||||||| ||||||| |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| ||||| ||| ||| ||||| |
|
|
| T |
12863854 |
caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgc |
12863755 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 27483161 - 27483102
Alignment:
| Q |
137 |
tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg |
196 |
Q |
| |
|
|||||||| ||||||||| ||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
27483161 |
tggcataaagatgtccctctgaaggttgttttgttcgcttggcggttattccgtgacagg |
27483102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 18967459 - 18967505
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| | ||||||||||| |
|
|
| T |
18967459 |
ctttggcataaggatatccctatgaaggttgtgctttttgcttggcg |
18967505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 12831879 - 12831794
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatgg |
277 |
Q |
| |
|
|||| |||||||||||| ||||||| |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| ||||| |
|
|
| T |
12831879 |
caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatgg |
12831794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 26779278 - 26779170
Alignment:
| Q |
68 |
gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt |
167 |
Q |
| |
|
|||| ||||| |||||||| ||| | | || | |||| ||||||||| | ||| |||| |||| || ||||||||||||| ||||| ||||||| || | |
|
|
| T |
26779278 |
gttcgtagtgcttataattacctgaatttttagcctcatattgcttctgtagtgcttgtgtcatatccttggcataaggatatccctctgaaggttgtct |
26779179 |
T |
 |
| Q |
168 |
tgtttgctt |
176 |
Q |
| |
|
||||||||| |
|
|
| T |
26779178 |
tgtttgctt |
26779170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 25392903 - 25392759
Alignment:
| Q |
48 |
aatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataagga |
147 |
Q |
| |
|
|||||||| ||||||| | ||| |||||||||||||||||||||| ||||||||| | ||||||| ||||||||| |||||| | | ||| ||||| |
|
|
| T |
25392903 |
aatcatctaatgctttttctattcgtagtgtttataatttcctaactgttcaacctcatgttgcttcactggtggttgtgtcatctttgtagcacaagga |
25392804 |
T |
 |
| Q |
148 |
tgtccctatgaaggtagtgttgtttgcttggcggttgttccggga |
192 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25392803 |
tgtccctctgaaggttgtgttgtttgcttggcggttgttccggga |
25392759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 358
Target Start/End: Complemental strand, 25392690 - 25392524
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgc |
291 |
Q |
| |
|
||||||| ||||| || ||||||||| ||||||||||||||||||||||||||| || | |||||||| ||||| ||||||||| ||| ||||||||| |
|
|
| T |
25392690 |
cagggtgtggttctattgaatcgtcttctcatttattcttacattgtaatatttttgggtccgtctggcactttatttatagatggttgggcatttctgc |
25392591 |
T |
 |
| Q |
292 |
ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt |
358 |
Q |
| |
|
|| | ||| |||||||||| ||||||||||||||||||| ||| |||| |||| ||| |||||| |
|
|
| T |
25392590 |
ggctgccccattttatgtgccggatcattttaatcaattcaattaaggtggcggtatcgctaaggtt |
25392524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 44674640 - 44674729
Alignment:
| Q |
73 |
tagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggt |
162 |
Q |
| |
|
||||| |||||||||| | ||| | ||||||| ||||||||| |||||||||| ||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
44674640 |
tagtgcttataatttcatgactctacaacctcatattgcttctacggtggttgtgtcatctctttggcataaagatgaccctctgaaggt |
44674729 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 7640014 - 7640069
Alignment:
| Q |
131 |
tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt |
186 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||| |
|
|
| T |
7640014 |
tctctttggcataaggatgttcctttgaaggtggtgttgttcgcttggcgcttgtt |
7640069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 36099114 - 36099052
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg |
196 |
Q |
| |
|
||||||||||||||||||||| | ||||| || ||||||||||||||||| ||| | |||||| |
|
|
| T |
36099114 |
ctttggcataaggatgtccctcttaaggttgttttgtttgcttggcggttattctgagacagg |
36099052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 42451107 - 42451051
Alignment:
| Q |
134 |
ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg |
190 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||| |||||| |||| ||||||||| |
|
|
| T |
42451107 |
ctttgacataaggatgtccctttgaaggtggtgttatttgctcggcgtttgttccgg |
42451051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 34703984 - 34703919
Alignment:
| Q |
125 |
gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg |
190 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | ||||| || || ||||||||||| ||||||||| |
|
|
| T |
34703984 |
gtttcttctctttggcataaagatgttcctttaaaggttgttttatttgcttggcgtttgttccgg |
34703919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 34236746 - 34236867
Alignment:
| Q |
68 |
gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt |
167 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||| ||| |||||||||| |||||| |||||| ||||||||||||||||| ||| || ||||||| |||| |
|
|
| T |
34236746 |
gttcgtagtgcttataatttccaaaatattcagccttctattgcttctccggtggatgtttcctctctttggcataaggacgtctctttgaaggtggtgt |
34236845 |
T |
 |
| Q |
168 |
tgtttgcttggcggttgttccg |
189 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
34236846 |
tgtttgcttgacgtttgttccg |
34236867 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 347
Target Start/End: Complemental strand, 17116768 - 17116614
Alignment:
| Q |
193 |
cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatt-ttggttttgtctggcattttatctatagatggatggacatttctgc |
291 |
Q |
| |
|
||||||||| ||| || |||| || ||||| ||||||||||||||||||||| ||| ||||||||||| ||||| |||||||| || | |||||| || |
|
|
| T |
17116768 |
cagggtgcgattctgtcgaatcatcctatcacttattcttacattgtaatattgatgggtttgtctggcactttatttatagatgaataggcatttcagc |
17116669 |
T |
 |
| Q |
292 |
ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggta |
347 |
Q |
| |
|
|||||||| | |||||| | ||||||||||||||||| |||| | ||||||||| |
|
|
| T |
17116668 |
agtcgtcccac-atatgtgtcggatcattttaatcaatttagttttggtggtggta |
17116614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 357
Target Start/End: Original strand, 34236925 - 34237052
Alignment:
| Q |
232 |
tacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaatt |
330 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||| ||||||||| | |||| |||| || | ||||| | |||||||||| || || |||||||| |
|
|
| T |
34236925 |
tacattgttatatttttgggtttgtctggcattttatatatagatggcttgacacttctacgaccatcccttataatgtgccagaccacttaaatcaatt |
34237024 |
T |
 |
| Q |
331 |
ca-gttatagtggtggtaccgcaaaggt |
357 |
Q |
| |
|
|| ||| ||||||| ||| ||||||||| |
|
|
| T |
34237025 |
caggttttagtggttgtatcgcaaaggt |
34237052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 354
Target Start/End: Complemental strand, 23710808 - 23710678
Alignment:
| Q |
225 |
ttattcttacattgtaatattttggttt-tgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcatttta |
323 |
Q |
| |
|
||||| |||||||||||| |||||| | ||| ||||||||||| ||||||||| || ||||| ||||| ||||||| ||||| | ||||| |||| |
|
|
| T |
23710808 |
ttattgttacattgtaattttttggggtctgtttggcattttatttatagatggttgagcatttatgcggctgtccctcagcatgtgtcggatcacttta |
23710709 |
T |
 |
| Q |
324 |
atcaattcagttatagtggtggtaccgcaaa |
354 |
Q |
| |
|
||||||||||| | ||||||| ||||||| |
|
|
| T |
23710708 |
ttcaattcagtttcattggtggtcccgcaaa |
23710678 |
T |
 |
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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 29216770 - 29216835
Alignment:
| Q |
289 |
tgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaa |
354 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29216770 |
tgcggtcgtccctctttatgtgccgaatcattttaataaattcagttatagtggtggtaccgcaaa |
29216835 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 33282554 - 33282703
Alignment:
| Q |
198 |
tgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcg |
296 |
Q |
| |
|
||||||||| || |||| ||| ||||||| || || ||||||||| |||| |||| |||| |||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
33282554 |
tgcggttcgtttgaatcatctaatcatttgttatt-cattgtaatttttttggttccatctgacattttatctatagatggctgggtatttctgcggttg |
33282652 |
T |
 |
| Q |
297 |
tccctctttatgtgccagatcattttaatcaattcagttatagtggtggta |
347 |
Q |
| |
|
||||| || || || | || || ||||| ||||||||| |||||||||||| |
|
|
| T |
33282653 |
tcccttttcatatgacggaccactttaaccaattcagtaatagtggtggta |
33282703 |
T |
 |
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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 4784283 - 4784347
Alignment:
| Q |
122 |
gttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt |
186 |
Q |
| |
|
|||||||| || |||||||| |||||||||||| ||||||| |||||| | |||||||| ||||| |
|
|
| T |
4784283 |
gttgtttcctcactttggcacaaggatgtccctttgaaggtggtgttgctcgcttggcgattgtt |
4784347 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 4784485 - 4784577
Alignment:
| Q |
255 |
tctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggta |
347 |
Q |
| |
|
||||| ||| ||||||||||||| ||| |||||||||| | |||| ||||||| ||||||| ||||||||||| ||| | || ||||||| |
|
|
| T |
4784485 |
tctggaattgtatctatagatggctgggtatttctgcggctgccccttattatgtgacagatcactttaatcaatttagtcacagcggtggta |
4784577 |
T |
 |
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Target: scaffold0233 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 11605 - 11666
Alignment:
| Q |
119 |
gtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||| ||||||| || |||||| ||||||| |
|
|
| T |
11605 |
gtggctgtgtcatctctttggcataaggatgtccctctgaaggttgtcttgtttacttggcg |
11666 |
T |
 |
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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 18650511 - 18650566
Alignment:
| Q |
131 |
tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt |
186 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| ||| |||||| |||||||||||| |
|
|
| T |
18650511 |
tctctctggcataaggatgttcctctgaaggtggtgctgtttgattggcggttgtt |
18650566 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 25408371 - 25408420
Alignment:
| Q |
131 |
tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg |
180 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||| || |||||||||||||| |
|
|
| T |
25408371 |
tctctctggcataaggatgttcctttgaaggttgtattgtttgcttggcg |
25408420 |
T |
 |
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