View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5145_low_7 (Length: 413)

Name: NF5145_low_7
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5145_low_7
NF5145_low_7
[»] chr6 (8 HSPs)
chr6 (1-402)||(34714437-34714838)
chr6 (119-188)||(14436385-14436454)
chr6 (310-357)||(7155272-7155319)
chr6 (117-196)||(2682351-2682430)
chr6 (106-180)||(17293212-17293286)
chr6 (137-190)||(27104882-27104935)
chr6 (137-190)||(27146691-27146744)
chr6 (132-184)||(12687791-12687843)
[»] chr2 (10 HSPs)
chr2 (44-402)||(27008763-27009121)
chr2 (193-358)||(30505448-30505614)
chr2 (44-192)||(30505231-30505379)
chr2 (231-346)||(27708398-27708514)
chr2 (98-186)||(27708626-27708714)
chr2 (269-355)||(9840576-9840662)
chr2 (134-180)||(13880336-13880382)
chr2 (134-180)||(14020461-14020507)
chr2 (308-357)||(20947957-20948006)
chr2 (134-187)||(39117024-39117077)
[»] chr4 (8 HSPs)
chr4 (194-358)||(22653021-22653186)
chr4 (51-192)||(22652810-22652951)
chr4 (125-192)||(20509990-20510057)
chr4 (117-170)||(25130897-25130950)
chr4 (131-186)||(5726741-5726796)
chr4 (193-291)||(20510126-20510225)
chr4 (73-180)||(30972808-30972915)
chr4 (134-178)||(9830991-9831035)
[»] chr5 (12 HSPs)
chr5 (68-192)||(19315394-19315518)
chr5 (193-247)||(19315271-19315325)
chr5 (80-186)||(25325677-25325782)
chr5 (125-192)||(12863923-12863990)
chr5 (220-357)||(704716-704854)
chr5 (125-192)||(12831948-12832015)
chr5 (195-247)||(25325859-25325911)
chr5 (193-291)||(12863755-12863854)
chr5 (137-196)||(27483102-27483161)
chr5 (134-180)||(18967459-18967505)
chr5 (193-277)||(12831794-12831879)
chr5 (68-176)||(26779170-26779278)
[»] chr1 (7 HSPs)
chr1 (48-192)||(25392759-25392903)
chr1 (193-358)||(25392524-25392690)
chr1 (73-162)||(44674640-44674729)
chr1 (131-186)||(7640014-7640069)
chr1 (134-196)||(36099052-36099114)
chr1 (134-190)||(42451051-42451107)
chr1 (125-190)||(34703919-34703984)
[»] chr7 (4 HSPs)
chr7 (68-189)||(34236746-34236867)
chr7 (193-347)||(17116614-17116768)
chr7 (232-357)||(34236925-34237052)
chr7 (225-354)||(23710678-23710808)
[»] chr8 (4 HSPs)
chr8 (289-354)||(29216770-29216835)
chr8 (198-347)||(33282554-33282703)
chr8 (122-186)||(4784283-4784347)
chr8 (255-347)||(4784485-4784577)
[»] scaffold0233 (1 HSPs)
scaffold0233 (119-180)||(11605-11666)
[»] chr3 (2 HSPs)
chr3 (131-186)||(18650511-18650566)
chr3 (131-180)||(25408371-25408420)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 34714437 - 34714838
Alignment:
1 gtggaggtggtgaaggcagaggttgtttgtgtgggaggatgagttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34714437 gtggaggtggtgaaggcagaggttgtttgtgtgggaggatgagttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaa 34714536  T
101 cctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34714537 cctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgc 34714636  T
201 ggttcggttaaatcgtcttatcatttattcttacattgtaatattttggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
34714637 ggttcggttaaatcgtcttatcatttattcttacattgtaatattttggttctgtctggcattttatctatagatggatggacatttctgcggtcgtccc 34714736  T
301 tctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34714737 tctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagta 34714836  T
401 tt 402  Q
    ||    
34714837 tt 34714838  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 14436454 - 14436385
Alignment:
119 gtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttcc 188  Q
    |||| |||| |||||||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||    
14436454 gtggatgttgcatctctttggcataaggatgtccccttgaaggtagtgttgtttgcatggcggttattcc 14436385  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 7155272 - 7155319
Alignment:
310 gccagatcattttaatcaattcagttatagtggtggtaccgcaaaggt 357  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
7155272 gccagatcattttaatcaattcagttatagtggtggtatcgcaaaggt 7155319  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 2682351 - 2682430
Alignment:
117 cggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg 196  Q
    |||||| |||||| |||||||||||||||||||||||| | ||| |  ||||||| ||||||||||| ||||| ||||||    
2682351 cggtggctgtttcctctctttggcataaggatgtccctcttaagattttgttgttcgcttggcggttattccgagacagg 2682430  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 17293286 - 17293212
Alignment:
106 tattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    ||||| ||| |||||||  || || |||||||||||||| ||||||||| ||||||| |||||||||||||||||    
17293286 tattgattctgcggtggcagtgtcttctctttggcataaagatgtccctctgaaggttgtgttgtttgcttggcg 17293212  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 27104882 - 27104935
Alignment:
137 tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg 190  Q
    |||||||||||||| ||| | ||||| ||||||||||||||||||||| |||||    
27104882 tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccgg 27104935  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 27146691 - 27146744
Alignment:
137 tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg 190  Q
    |||||||||||||| ||| | ||||| ||||||||||||||||||||| |||||    
27146691 tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccgg 27146744  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 12687791 - 12687843
Alignment:
132 ctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttg 184  Q
    |||| |||||||||||||| ||| | ||||| |||||||||||||||||||||    
12687791 ctctatggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttg 12687843  T

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Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 44 - 402
Target Start/End: Original strand, 27008763 - 27009121
Alignment:
44 ttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcata 143  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
27008763 ttggaatcatctcatgctttctctgttcatagtgtttacaatttcctaactattcaacctcctattgcttcagcggtggttgtttcatctctttggcata 27008862  T
144 aggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaata 243  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
27008863 aggatgtccctctgaaggcagtgttgtttgcttggcggttgttccgagacagggtgcggttcggttgaatcgtcttatcatttattcttacattgtaata 27008962  T
244 ttttggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggt 343  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
27008963 ttttggttctgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccggatcattttaatcaattcagttatagtggt 27009062  T
344 ggtaccgcaaaggttatttggtttgctactatttgctttcaatattataggttagtatt 402  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
27009063 ggtaccgtaaaggttatttggtttgctactatttgctttcaatattataagttagtatt 27009121  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 193 - 358
Target Start/End: Original strand, 30505448 - 30505614
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgc 291  Q
    |||||||||||| |||| ||| |||||||||||| |||||||||||||||||||| || | ||||||| ||||||| ||||||| | ||| |||||||||    
30505448 cagggtgcggtttggttgaattgtcttatcatttgttcttacattgtaatatttttgggtctgtctggtattttatttatagatagctgggcatttctgc 30505547  T
292 ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt 358  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
30505548 ggtcgtccctctttatgtgccggatcattttaatcaatttagttatagtggtggtaccgcaaaggtt 30505614  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 30505231 - 30505379
Alignment:
44 ttggaatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcata 143  Q
    |||||| ||||||||||||| |  ||||||||| ||||||||||||||||||||||||||| |||| ||||   ||||| | ||||||||||||| ||||    
30505231 ttggaaacatctcatgctttttgtgttcatagtctttataatttcctaactattcaacctcatattacttcactggtggctatttcatctctttgacata 30505330  T
144 aggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
    ||||||||||| ||||||| |||||||||| |||| |||||||||||||    
30505331 aggatgtccctctgaaggttgtgttgtttgtttggtggttgttccggga 30505379  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 27708514 - 27708398
Alignment:
231 ttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaat 329  Q
    |||||||||||| |||| || |||||||| ||||| || ||||||||| ||| |||||||||||| |||||||  ||| |||  ||||||| || |||||    
27708514 ttacattgtaatttttttgggtttgtctgccatttaatttatagatggttgggcatttctgcggttgtccctcagtatatgctggatcattctattcaat 27708415  T
330 tcagttatagtggtggt 346  Q
    |||||||||||||||||    
27708414 tcagttatagtggtggt 27708398  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 27708714 - 27708626
Alignment:
98 caacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt 186  Q
    ||||||||||||||| |  |||||   ||||||||||| |||||||||||||| ||| |||| || | |||| |||||||| |||||||    
27708714 caacctcctattgctacatcggtgcccgtttcatctctctggcataaggatgttcctttgaaagttgcgttgcttgcttggtggttgtt 27708626  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 9840576 - 9840662
Alignment:
269 tatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaag 355  Q
    ||||||||| | ||||||||||| || |||||||  | | || | |||||||||| ||||||| |||||||||||||| | ||||||    
9840576 tatagatggctcgacatttctgcagttgtccctcaatttatgtcggatcattttattcaattctgttatagtggtggtccggcaaag 9840662  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 13880336 - 13880382
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    ||||||||||||||||||| ||||||||| ||| | |||||||||||    
13880336 ctttggcataaggatgtccttatgaaggttgtgatttttgcttggcg 13880382  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 14020461 - 14020507
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    ||||||||||||||||||| ||||||||| ||| | |||||||||||    
14020461 ctttggcataaggatgtccttatgaaggttgtgatttttgcttggcg 14020507  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 20947957 - 20948006
Alignment:
308 gtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggt 357  Q
    ||||||||||||||||| ||||| |||| | ||||||||||| |||||||    
20947957 gtgccagatcattttaaccaatttagttttggtggtggtaccacaaaggt 20948006  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 39117024 - 39117077
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttc 187  Q
    ||||||||||||||||||||| | || || ||||||||||||| ||| ||||||    
39117024 ctttggcataaggatgtccctttaaaagtggtgttgtttgctttgcgtttgttc 39117077  T

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Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 194 - 358
Target Start/End: Original strand, 22653021 - 22653186
Alignment:
194 agggtgcggttcggttaaatcgtcttatcatttattcttacattgtaata-ttttggttttgtctggcattttatctatagatggatggacatttctgcg 292  Q
    |||||||||||||||| |||||||   |||||| || ||||||||||||  |||||| |  |||||||||||||| ||||||||| ||   |||||||||    
22653021 agggtgcggttcggttgaatcgtccgctcatttgttattacattgtaattgttttgggtcggtctggcattttatttatagatggttgtgtatttctgcg 22653120  T
293 gtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt 358  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
22653121 gtcgtccctctttacgtgcaagatcattttattcaattcagttatagtggtggtaccgcaaaggtt 22653186  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 22652810 - 22652951
Alignment:
51 catctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgt 150  Q
    ||||||||||||| |  |||| ||||||||| |||||| ||||| | |||||||| |||||| |  | ||||||||||||||||||||||||| ||||||    
22652810 catctcatgctttttctgttcgtagtgtttacaatttcttaactgtgcaacctccaattgctacatcagtggttgtttcatctctttggcatatggatgt 22652909  T
151 ccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
     | | | ||||| ||||||||| |||||||||||||| ||||    
22652910 tcttcttaaggttgtgttgtttacttggcggttgttctggga 22652951  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 20509990 - 20510057
Alignment:
125 gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
    ||||||||||| |||||||||||||| ||| | ||||| || |||||||||||||| |||||||||||    
20509990 gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccggga 20510057  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 25130950 - 25130897
Alignment:
117 cggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgt 170  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||| |||||||    
25130950 cggtggttgcgtcatctcattggcataaggatgtccctctgaaggttgtgttgt 25130897  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 5726741 - 5726796
Alignment:
131 tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt 186  Q
    ||||| |||||||||||||| ||| ||||||| ||| |||||| ||||||||||||    
5726741 tctctctggcataaggatgttcctctgaaggtggtgctgtttgattggcggttgtt 5726796  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 20510126 - 20510225
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatggatggacatttctgc 291  Q
    |||| |||||||||||| |||||||  |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| ||||| ||| ||| |||||    
20510126 caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgc 20510225  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 30972915 - 30972808
Alignment:
73 tagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgttt 172  Q
    ||||| ||||||||| || ||| ||||||||||  ||| |||   |||||  || || ||||||||| |||| ||||||||| ||||||| || ||||||    
30972915 tagtgcttataatttgctcacttttcaacctccgtttgtttctatggtggcggtgtcctctctttggaataaagatgtccctttgaaggtcgttttgttt 30972816  T
173 gcttggcg 180  Q
    ||||||||    
30972815 gcttggcg 30972808  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 9830991 - 9831035
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttgg 178  Q
    ||||||||||||||||||||| ||||||| || || |||||||||    
9830991 ctttggcataaggatgtccctctgaaggttgttttatttgcttgg 9831035  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 19315518 - 19315394
Alignment:
68 gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt 167  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||  |||||||||| |||| |||||||||||||||||||||| | ||||| ||||    
19315518 gttcgtagtgtttataatttcctaactactcaacctcatattgcttctacggtggttgtgtcatttctttggcataaggatgtccctcttaaggttgtgt 19315419  T
168 tgtttgcttggcggttgttccggga 192  Q
    ||||||||||||  |||||||||||    
19315418 tgtttgcttggcaattgttccggga 19315394  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 19315325 - 19315271
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt 247  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
19315325 cagggtgcggttctgttgaatcgtcttatcatttaatcttacattgtaatatttt 19315271  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 25325677 - 25325782
Alignment:
80 tataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggc 179  Q
    |||||||| |||||| |||||||||||||||||||   ||| |||||| |   ||||||| |||||||||| |||  |||||| ||||||||||||||||    
25325677 tataattttctaacttttcaacctcctattgcttcacgggtagttgttccca-tctttggaataaggatgttcctccgaaggtggtgttgtttgcttggc 25325775  T
180 ggttgtt 186  Q
    |||||||    
25325776 ggttgtt 25325782  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12863990 - 12863923
Alignment:
125 gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
    ||||||||||| |||||||||||||| ||| | ||||| || |||||||||||||| |||||||||||    
12863990 gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccggga 12863923  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 704854 - 704716
Alignment:
220 atcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatca 318  Q
    |||||||||||||||||||| || |||| || |   | |||||||| |||||||||||| | | |||||| ||||  ||| |  ||||||| || || ||    
704854 atcatttattcttacattgtcatgtttttgggtccatttggcatttaatctatagatggctaggcatttcagcggctgtctcgttttatgtaccggacca 704755  T
319 ttttaatcaattcagttatagtggtggtaccgcaaaggt 357  Q
    |||||||||||||||||||||| |||||| | |||||||    
704754 ttttaatcaattcagttatagtagtggtatctcaaaggt 704716  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12832015 - 12831948
Alignment:
125 gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
    ||||||||||| |||||||||||||| ||| | ||||| || |||||||||||| | |||||||||||    
12832015 gtttcatctctctggcataaggatgttcctttaaaggttgtcttgtttgcttggtgtttgttccggga 12831948  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 25325859 - 25325911
Alignment:
195 gggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt 247  Q
    ||||| ||||||||| |||| ||  ||||||||||||||||||||||||||||    
25325859 gggtgtggttcggttgaatcctcccatcatttattcttacattgtaatatttt 25325911  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 12863854 - 12863755
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatggatggacatttctgc 291  Q
    |||| |||||||||||| |||||||  |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| ||||| ||| ||| |||||    
12863854 caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatggctgggcatatctgc 12863755  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 27483161 - 27483102
Alignment:
137 tggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg 196  Q
    |||||||| ||||||||| ||||||| || ||||| ||||||||||| ||||| ||||||    
27483161 tggcataaagatgtccctctgaaggttgttttgttcgcttggcggttattccgtgacagg 27483102  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 18967459 - 18967505
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||||    
18967459 ctttggcataaggatatccctatgaaggttgtgctttttgcttggcg 18967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 12831879 - 12831794
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatat-tttggttttgtctggcattttatctatagatgg 277  Q
    |||| |||||||||||| |||||||  |||| ||||| ||||| |||||| | ||||||| |||||||||||| || ||| |||||    
12831879 caggatgcggttcggttgaatcgtccaatcacttattattacactgtaatttctttggttctgtctggcatttaatttatggatgg 12831794  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 26779278 - 26779170
Alignment:
68 gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt 167  Q
    |||| ||||| |||||||| ||| | | || | |||| ||||||||| |  ||| |||| |||| || ||||||||||||| ||||| ||||||| || |    
26779278 gttcgtagtgcttataattacctgaatttttagcctcatattgcttctgtagtgcttgtgtcatatccttggcataaggatatccctctgaaggttgtct 26779179  T
168 tgtttgctt 176  Q
    |||||||||    
26779178 tgtttgctt 26779170  T

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Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 25392903 - 25392759
Alignment:
48 aatcatctcatgctttcttggttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataagga 147  Q
    |||||||| ||||||| |   ||| |||||||||||||||||||||| ||||||||| | |||||||   ||||||||| |||||| | | ||| |||||    
25392903 aatcatctaatgctttttctattcgtagtgtttataatttcctaactgttcaacctcatgttgcttcactggtggttgtgtcatctttgtagcacaagga 25392804  T
148 tgtccctatgaaggtagtgttgtttgcttggcggttgttccggga 192  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
25392803 tgtccctctgaaggttgtgttgtttgcttggcggttgttccggga 25392759  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 358
Target Start/End: Complemental strand, 25392690 - 25392524
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgc 291  Q
    ||||||| |||||  || ||||||||| ||||||||||||||||||||||||||| || |  |||||||| ||||| ||||||||| ||| |||||||||    
25392690 cagggtgtggttctattgaatcgtcttctcatttattcttacattgtaatatttttgggtccgtctggcactttatttatagatggttgggcatttctgc 25392591  T
292 ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaaggtt 358  Q
    ||  | |||  |||||||||| ||||||||||||||||||| |||  |||| |||| ||| ||||||    
25392590 ggctgccccattttatgtgccggatcattttaatcaattcaattaaggtggcggtatcgctaaggtt 25392524  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 44674640 - 44674729
Alignment:
73 tagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggt 162  Q
    ||||| |||||||||| | ||| | ||||||| |||||||||  |||||||||| ||||||||||||||||| |||| |||| |||||||    
44674640 tagtgcttataatttcatgactctacaacctcatattgcttctacggtggttgtgtcatctctttggcataaagatgaccctctgaaggt 44674729  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 7640014 - 7640069
Alignment:
131 tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt 186  Q
    |||||||||||||||||||| ||| ||||||| |||||||| |||||||| |||||    
7640014 tctctttggcataaggatgttcctttgaaggtggtgttgttcgcttggcgcttgtt 7640069  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 36099114 - 36099052
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgggacagg 196  Q
    ||||||||||||||||||||| | ||||| || ||||||||||||||||| ||| | ||||||    
36099114 ctttggcataaggatgtccctcttaaggttgttttgtttgcttggcggttattctgagacagg 36099052  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 42451107 - 42451051
Alignment:
134 ctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg 190  Q
    ||||| ||||||||||||||| ||||||| ||||| |||||| |||| |||||||||    
42451107 ctttgacataaggatgtccctttgaaggtggtgttatttgctcggcgtttgttccgg 42451051  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 34703984 - 34703919
Alignment:
125 gtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgttccgg 190  Q
    ||||| |||||||||||||| ||||| ||| | ||||| || || ||||||||||| |||||||||    
34703984 gtttcttctctttggcataaagatgttcctttaaaggttgttttatttgcttggcgtttgttccgg 34703919  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 34236746 - 34236867
Alignment:
68 gttcatagtgtttataatttcctaactattcaacctcctattgcttccgcggtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgt 167  Q
    |||| ||||| ||||||||||| || |||||| ||| ||||||||||  |||||| |||||| ||||||||||||||||| ||| || ||||||| ||||    
34236746 gttcgtagtgcttataatttccaaaatattcagccttctattgcttctccggtggatgtttcctctctttggcataaggacgtctctttgaaggtggtgt 34236845  T
168 tgtttgcttggcggttgttccg 189  Q
    |||||||||| || ||||||||    
34236846 tgtttgcttgacgtttgttccg 34236867  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 347
Target Start/End: Complemental strand, 17116768 - 17116614
Alignment:
193 cagggtgcggttcggttaaatcgtcttatcatttattcttacattgtaatatt-ttggttttgtctggcattttatctatagatggatggacatttctgc 291  Q
    ||||||||| ||| ||  |||| || ||||| |||||||||||||||||||||  ||| ||||||||||| ||||| |||||||| || | |||||| ||    
17116768 cagggtgcgattctgtcgaatcatcctatcacttattcttacattgtaatattgatgggtttgtctggcactttatttatagatgaataggcatttcagc 17116669  T
292 ggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggta 347  Q
     |||||||| |  |||||| | ||||||||||||||||| |||| | |||||||||    
17116668 agtcgtcccac-atatgtgtcggatcattttaatcaatttagttttggtggtggta 17116614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 357
Target Start/End: Original strand, 34236925 - 34237052
Alignment:
232 tacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaatt 330  Q
    |||||||| ||||||| || ||||||||||||||||| ||||||||| | |||| |||| ||  | |||||  | |||||||||| || || ||||||||    
34236925 tacattgttatatttttgggtttgtctggcattttatatatagatggcttgacacttctacgaccatcccttataatgtgccagaccacttaaatcaatt 34237024  T
331 ca-gttatagtggtggtaccgcaaaggt 357  Q
    || ||| ||||||| ||| |||||||||    
34237025 caggttttagtggttgtatcgcaaaggt 34237052  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 354
Target Start/End: Complemental strand, 23710808 - 23710678
Alignment:
225 ttattcttacattgtaatattttggttt-tgtctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcatttta 323  Q
    ||||| |||||||||||| ||||||  | ||| ||||||||||| ||||||||| ||  ||||| |||||  |||||||   ||||| | ||||| ||||    
23710808 ttattgttacattgtaattttttggggtctgtttggcattttatttatagatggttgagcatttatgcggctgtccctcagcatgtgtcggatcacttta 23710709  T
324 atcaattcagttatagtggtggtaccgcaaa 354  Q
     |||||||||||  | ||||||| |||||||    
23710708 ttcaattcagtttcattggtggtcccgcaaa 23710678  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 29216770 - 29216835
Alignment:
289 tgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggtaccgcaaa 354  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
29216770 tgcggtcgtccctctttatgtgccgaatcattttaataaattcagttatagtggtggtaccgcaaa 29216835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 33282554 - 33282703
Alignment:
198 tgcggttcggttaaatcgtcttatcatttattcttacattgtaatatttt-ggttttgtctggcattttatctatagatggatggacatttctgcggtcg 296  Q
    ||||||||| || |||| ||| ||||||| || || ||||||||| |||| ||||   |||| |||||||||||||||||| |||  ||||||||||| |    
33282554 tgcggttcgtttgaatcatctaatcatttgttatt-cattgtaatttttttggttccatctgacattttatctatagatggctgggtatttctgcggttg 33282652  T
297 tccctctttatgtgccagatcattttaatcaattcagttatagtggtggta 347  Q
    ||||| || || || | || || ||||| ||||||||| ||||||||||||    
33282653 tcccttttcatatgacggaccactttaaccaattcagtaatagtggtggta 33282703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 4784283 - 4784347
Alignment:
122 gttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt 186  Q
    |||||||| || |||||||| |||||||||||| ||||||| |||||| | |||||||| |||||    
4784283 gttgtttcctcactttggcacaaggatgtccctttgaaggtggtgttgctcgcttggcgattgtt 4784347  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 4784485 - 4784577
Alignment:
255 tctggcattttatctatagatggatggacatttctgcggtcgtccctctttatgtgccagatcattttaatcaattcagttatagtggtggta 347  Q
    ||||| ||| ||||||||||||| |||  ||||||||||  | ||||  ||||||| ||||||| ||||||||||| ||| | || |||||||    
4784485 tctggaattgtatctatagatggctgggtatttctgcggctgccccttattatgtgacagatcactttaatcaatttagtcacagcggtggta 4784577  T

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Target: scaffold0233 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 11605 - 11666
Alignment:
119 gtggttgtttcatctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||| || |||||| |||||||    
11605 gtggctgtgtcatctctttggcataaggatgtccctctgaaggttgtcttgtttacttggcg 11666  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 18650511 - 18650566
Alignment:
131 tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcggttgtt 186  Q
    ||||| |||||||||||||| ||| ||||||| ||| |||||| ||||||||||||    
18650511 tctctctggcataaggatgttcctctgaaggtggtgctgtttgattggcggttgtt 18650566  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 25408371 - 25408420
Alignment:
131 tctctttggcataaggatgtccctatgaaggtagtgttgtttgcttggcg 180  Q
    ||||| |||||||||||||| ||| ||||||| || ||||||||||||||    
25408371 tctctctggcataaggatgttcctttgaaggttgtattgtttgcttggcg 25408420  T

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