View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5145_low_9 (Length: 378)
Name: NF5145_low_9
Description: NF5145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5145_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 45308757 - 45309109
Alignment:
| Q |
18 |
actgatttcattatataatcatcacagatagaaataaaagattgtaacatactaagatatatataatgaaaactaaaacattgctagtctcgtccttttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45308757 |
actgatttcattatataatcatcacagatagaaataatagtttgtaacatactaagatatatataatgaaaactaaaacattgctagtctcgtccttttt |
45308856 |
T |
|
| Q |
118 |
cctcatcttgattattaatattacttttggtattgtccacagtgataatttcaatgagtttagaatccctaataaggttgtcaagtccttatgcaaagac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45308857 |
cctcatcttgattattaatattacttttggtattgtccacagtgataatttcaatgagtttagaatccctaataaggttgtcaagtccttatgcaaagac |
45308956 |
T |
|
| Q |
218 |
actgatgaccataaactttgccatgatgtcctctaccccgtgaaaacctcaaacccaatagattatattgatgttgtggtgaagaacttgatggaaagcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45308957 |
actgatgaccataaactttgccatgatgtcctctaccccgtgaaaacctcaaacccaatagattatattgatgttgtggtgaagaacttgatggaaagcg |
45309056 |
T |
|
| Q |
318 |
tagaaaacgcatttaatgacatgagtaataaacttagttctatggagaataat |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309057 |
tagaaaacgcatttaatgacatgagtaataaacttagttctatggagaataat |
45309109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University