View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5146-Insertion-2 (Length: 756)

Name: NF5146-Insertion-2
Description: NF5146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5146-Insertion-2
NF5146-Insertion-2
[»] chr8 (10 HSPs)
chr8 (387-756)||(14726882-14727253)
chr8 (9-306)||(14727334-14727630)
chr8 (19-191)||(30648585-30648757)
chr8 (19-222)||(26088914-26089120)
chr8 (10-131)||(28865709-28865830)
chr8 (22-131)||(15329612-15329721)
chr8 (22-131)||(15509981-15510090)
chr8 (479-531)||(28700543-28700595)
chr8 (698-746)||(30648463-30648511)
chr8 (481-530)||(30085518-30085567)
[»] chr1 (3 HSPs)
chr1 (9-230)||(26086619-26086840)
chr1 (486-531)||(29068075-29068120)
chr1 (698-747)||(26087151-26087200)
[»] chr7 (4 HSPs)
chr7 (9-245)||(17292838-17293074)
chr7 (9-186)||(6611070-6611247)
chr7 (669-756)||(6611905-6611992)
chr7 (486-531)||(43930098-43930143)
[»] chr3 (2 HSPs)
chr3 (486-531)||(29235644-29235689)
chr3 (9-85)||(4819716-4819792)
[»] chr5 (1 HSPs)
chr5 (486-531)||(5990658-5990703)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 387 - 756
Target Start/End: Complemental strand, 14727253 - 14726882
Alignment:
Q  387 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattagaaacagataagtgtaatctatagtttctctcacactttataatacg 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |    
T  14727253 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattaaaaacatacacgtgtaatctatagtttctctcacactttataatatg 14727154  T
Q  487 aggagtgttatggacaccctctttctaacactttctgtaaca--ctctattttcggaataattcatgtgggtctcagactttaaaatctagtgagactcg 584  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||| || | |||||||||||||||||||| ||||||||||| || ||||||||||    
T  14727153 aggagtgttatggacaccctctttctaacactttctctaacatactctcttctgggaataattcatgtgggtcttagactttaaaaactggtgagactcg 14727054  T
Q  585 catggagttcaaccaataggagatccggtgttagagagagtgttcctggcatttaatagaggcaaaaactagaaacatataacagagacatgtgatttta 684  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14727053 catggagttcaaccaataggagatcctgtgttagagagagtgttcttagcatttaatagaggcaaaaactagaaacatataaaagagacatgtgatttta 14726954  T
Q  685 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatc 756  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14726953 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatc 14726882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 14727630 - 14727334
Alignment:
Q  9 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727630 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc 14727531  T
Q  109 tgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgtt 208  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727530 tgttttgttctccaaattcttttccttcaaatttataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgtt 14727431  T
Q  209 agaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaaacaacctatctactttataagttgtctttccctcatctttcttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  14727430 agaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaaacaacctatctactttataagttgtc-ttccctcatcttccttt 14727334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 30648757 - 30648585
Alignment:
Q  19 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttc 118  Q
    |||||||  ||||| |||||||  |||| |||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||    
T  30648757 tgtgggataatcagtgacttctgagctaggttttgttccaacacttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttc 30648658  T
Q  119 tcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaa 191  Q
    ||   ||||||| ||| |||||  ||||||||||||||||||||| ||||||||||| |||| ||| ||||||    
T  30648657 tcactattctttgccttcaaatctataccagtacttaccaacaatagaagtgcctgtactacaaagaaattaa 30648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 26089120 - 26088914
Alignment:
Q  19 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttc 118  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||  ||||| ||||||| |||||||||||| |||||||||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttc 26089021  T
Q  119 tcgaaattcttttcctccaaattgat---accagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatc 215  Q
    || | |||||||      ||||  ||   |||||||| || ||| ||| |||||||||||||||| ||| |||| | ||||| |||| || ||||| |||    
T  26089020 tccagattctttgaacataaatctatacgaccagtacgtaacaataatagaagtgcctgtgctacgaagaaattgaagaacaatacaattattagagatc 26088921  T
Q  216 attcatg 222  Q
    |||||||    
T  26088920 attcatg 26088914  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 28865830 - 28865709
Alignment:
Q  10 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgct 109  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||||||||| ||||||||  |||||| |||||| ||||||    
T  28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctggaatgcttgctatgtccaatgct 28865731  T
Q  110 gttttgttctcgaaattctttt 131  Q
    ||||| ||||| ||||||||||    
T  28865730 gttttattctccaaattctttt 28865709  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 15329721 - 15329612
Alignment:
Q  22 gggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcg 121  Q
    ||||||||| | |||||||| |||  ||||||  ||| |||| |||||||||||||| ||||||||  |||||| |||||| ||||||||||| |||||     
T  15329721 gggagcatctgtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctcc 15329622  T
Q  122 aaattctttt 131  Q
    ||||||||||    
T  15329621 aaattctttt 15329612  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 15510090 - 15509981
Alignment:
Q  22 gggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcg 121  Q
    ||||||||| | |||||||| |||  ||||||  ||| |||| |||||||||||||| ||||||||  |||||| |||||| ||||||||||| |||||     
T  15510090 gggagcatctgtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctcc 15509991  T
Q  122 aaattctttt 131  Q
    ||||||||||    
T  15509990 aaattctttt 15509981  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 28700543 - 28700595
Alignment:
Q  479 ataatacgaggagtgttatggacaccctctttctaacactttctgtaacactc 531  Q
    |||||| ||||||||||||| |||| |||||||||||||| ||| ||||||||    
T  28700543 ataataagaggagtgttatgtacactctctttctaacactctctctaacactc 28700595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 698 - 746
Target Start/End: Complemental strand, 30648511 - 30648463
Alignment:
Q  698 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgc 746  Q
    ||||||||| | ||||||||||| ||||||||||||||||| |||||||    
T  30648511 attacctgcgggtcactacttagtgctgaaatatgcaaaattgtgttgc 30648463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 30085567 - 30085518
Alignment:
Q  481 aatacgaggagtgttatggacaccctctttctaacactttctgtaacact 530  Q
    |||| ||||| |||||||||||| |||||||||||||| ||| |||||||    
T  30085567 aataagaggaatgttatggacactctctttctaacactctctctaacact 30085518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 26086619 - 26086840
Alignment:
Q  9 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc 108  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||||||||| |||| ||| ||||||| ||||||||||||    
T  26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgc 26086718  T
Q  109 tgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgtt 208  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||||| ||||||| |||||  ||||||||||| ||| ||||| || | || |  ||||    
T  26086719 tgttttgttctccaaattctttgcctcgaaatttataccagtacttagcaacaatagaagtttctgtgctaccacgtagttaataaaaaatataaatgtt 26086818  T
Q  209 agaaatcattcatgtaagcaac 230  Q
    ||| |||||||| || ||||||    
T  26086819 agagatcattcaagttagcaac 26086840  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 29068075 - 29068120
Alignment:
Q  486 gaggagtgttatggacaccctctttctaacactttctgtaacactc 531  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29068075 gaggagtgttatggacactctctttctaacactttctctaacactc 29068120  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 26087151 - 26087200
Alignment:
Q  698 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgcc 747  Q
    ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||    
T  26087151 attacctgcggctcaatacttagtgctgaaacatgcaaaatggtgttgcc 26087200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 17292838 - 17293074
Alignment:
Q  9 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc 108  Q
    |||||||| |||||||||||||   |||||||| |||| |||||| |||| |||| ||||| ||||||||  ||||| | |||   |  |||||||||||    
T  17292838 tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctctagagtggcggcaatgtctaatgc 17292937  T
Q  109 tgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgtt 208  Q
    |||||||||||| ||||||||  ||| |||||| || |||||||||||||||||| |||| |||||||||||  ||||||| ||||||  |||| |||||    
T  17292938 tgttttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaagcgcctgtgctacatagtaattcatgaacgatacaattgtt 17293037  T
Q  209 agaaatcattcatgtaagcaactaaaatcttcacaag 245  Q
    | | ||||||||| | |||||||||||| ||||||||    
T  17293038 aaagatcattcatattagcaactaaaatattcacaag 17293074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 6611070 - 6611247
Alignment:
Q  9 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgc 108  Q
    |||||||| ||||||||  || || |||||||| |||| ||||||||||||| || ||||| |||||||| |||  ||| ||||||| ||||||||||||    
T  6611070 tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgc 6611169  T
Q  109 tgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagta 186  Q
    ||||||| |||| || ||| ||   | |||||| ||   |||  ||||||||||| ||| ||||||| ||||||||||    
T  6611170 tgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctgttctaccaagta 6611247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 669 - 756
Target Start/End: Original strand, 6611905 - 6611992
Alignment:
Q  669 gagacatgtgattttagttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatc 756  Q
    ||||||||||||||||||||||  ||||  |||||||  ||||  ||||||| ||||||||||||||||||||||||||  |||||||    
T  6611905 gagacatgtgattttagttattcaataaggttacctggcgctccgtacttagtgctgaaatatgcaaaatggtgttgcctgcctcatc 6611992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 43930143 - 43930098
Alignment:
Q  486 gaggagtgttatggacaccctctttctaacactttctgtaacactc 531  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  43930143 gaggagtgttatggacactctctttctaacactctctctaacactc 43930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 531
Target Start/End: Original strand, 29235644 - 29235689
Alignment:
Q  486 gaggagtgttatggacaccctctttctaacactttctgtaacactc 531  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  29235644 gaggagtgttatggacactctctttctaacactctctctaacactc 29235689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 4819792 - 4819716
Alignment:
Q  9 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctct 85  Q
    |||||||| ||||||| ||||  | |||||| | || | ||||||||||||||||| ||||||||||||| ||||||    
T  4819792 tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctct 4819716  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 531
Target Start/End: Complemental strand, 5990703 - 5990658
Alignment:
Q  486 gaggagtgttatggacaccctctttctaacactttctgtaacactc 531  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  5990703 gaggagtgctatggacactctctttctaacactttctccaacactc 5990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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