View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5146_high_15 (Length: 312)

Name: NF5146_high_15
Description: NF5146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5146_high_15
NF5146_high_15
[»] chr4 (10 HSPs)
chr4 (213-284)||(26444584-26444655)
chr4 (213-284)||(46739871-46739942)
chr4 (214-284)||(35659455-35659525)
chr4 (215-284)||(19567235-19567304)
chr4 (214-281)||(12622069-12622136)
chr4 (234-284)||(12622166-12622216)
chr4 (214-284)||(16027372-16027442)
chr4 (214-284)||(35659355-35659425)
chr4 (234-284)||(44024856-44024906)
chr4 (234-266)||(3484485-3484517)
[»] chr2 (9 HSPs)
chr2 (212-311)||(21317011-21317110)
chr2 (213-311)||(21337002-21337100)
chr2 (213-284)||(1385016-1385087)
chr2 (214-284)||(1385117-1385187)
chr2 (234-284)||(10744580-10744630)
chr2 (214-268)||(21367510-21367564)
chr2 (170-215)||(1385016-1385061)
chr2 (120-172)||(1385109-1385161)
chr2 (234-266)||(32215770-32215802)
[»] chr3 (11 HSPs)
chr3 (214-311)||(17206804-17206901)
chr3 (213-284)||(17206740-17206811)
chr3 (214-284)||(24545350-24545420)
chr3 (214-284)||(24549327-24549397)
chr3 (214-284)||(24553953-24554023)
chr3 (214-284)||(24557012-24557082)
chr3 (217-280)||(54331675-54331738)
chr3 (234-284)||(11191225-11191275)
chr3 (238-284)||(12860502-12860548)
chr3 (234-284)||(16180665-16180715)
chr3 (120-172)||(17206857-17206909)
[»] scaffold1256 (2 HSPs)
scaffold1256 (212-284)||(579-651)
scaffold1256 (214-284)||(681-751)
[»] chr6 (10 HSPs)
chr6 (214-284)||(23492817-23492887)
chr6 (214-284)||(23498415-23498485)
chr6 (215-284)||(19958208-19958277)
chr6 (213-284)||(22555875-22555946)
chr6 (234-284)||(23492734-23492784)
chr6 (234-284)||(23498332-23498382)
chr6 (120-172)||(23492809-23492861)
chr6 (120-172)||(23498407-23498459)
chr6 (234-266)||(23991898-23991930)
chr6 (234-266)||(34962761-34962793)
[»] chr1 (9 HSPs)
chr1 (214-284)||(44891318-44891388)
chr1 (214-284)||(17904357-17904427)
chr1 (214-284)||(24721121-24721191)
chr1 (214-284)||(45473852-45473922)
chr1 (237-284)||(6832986-6833033)
chr1 (213-284)||(44891227-44891298)
chr1 (249-285)||(12709839-12709875)
chr1 (234-266)||(14239064-14239096)
chr1 (120-172)||(44891344-44891396)
[»] chr5 (7 HSPs)
chr5 (216-288)||(26646366-26646438)
chr5 (213-284)||(6551786-6551857)
chr5 (217-284)||(6551916-6551983)
chr5 (214-285)||(12354851-12354922)
chr5 (234-284)||(14027168-14027218)
chr5 (220-275)||(8834459-8834514)
chr5 (234-284)||(8505025-8505075)
[»] scaffold0231 (1 HSPs)
scaffold0231 (213-284)||(19129-19200)
[»] scaffold0063 (1 HSPs)
scaffold0063 (213-284)||(61447-61518)
[»] scaffold0011 (2 HSPs)
scaffold0011 (214-284)||(39599-39669)
scaffold0011 (214-284)||(39499-39569)
[»] scaffold0108 (2 HSPs)
scaffold0108 (214-284)||(8221-8291)
scaffold0108 (120-172)||(8213-8265)
[»] chr8 (10 HSPs)
chr8 (214-284)||(2718068-2718138)
chr8 (214-284)||(36733872-36733942)
chr8 (214-285)||(22473109-22473180)
chr8 (214-284)||(22473210-22473280)
chr8 (220-284)||(6574350-6574414)
chr8 (217-284)||(18820422-18820489)
chr8 (213-284)||(36406297-36406368)
chr8 (234-284)||(18820339-18820389)
chr8 (234-266)||(16414120-16414152)
chr8 (234-266)||(32121123-32121155)
[»] chr7 (6 HSPs)
chr7 (213-284)||(9744447-9744518)
chr7 (214-284)||(9744357-9744427)
chr7 (214-284)||(15577259-15577329)
chr7 (234-284)||(13134276-13134326)
chr7 (238-283)||(20253970-20254015)
chr7 (171-214)||(9744357-9744400)
[»] scaffold0453 (1 HSPs)
scaffold0453 (238-284)||(6012-6058)
[»] scaffold0213 (1 HSPs)
scaffold0213 (214-284)||(17854-17924)
[»] scaffold0628 (1 HSPs)
scaffold0628 (217-284)||(4850-4918)
[»] scaffold0113 (1 HSPs)
scaffold0113 (234-285)||(33543-33594)
[»] scaffold0439 (1 HSPs)
scaffold0439 (235-284)||(3135-3184)
[»] scaffold0716 (1 HSPs)
scaffold0716 (234-266)||(4090-4122)
[»] scaffold0054 (1 HSPs)
scaffold0054 (234-286)||(66627-66679)
[»] scaffold0023 (1 HSPs)
scaffold0023 (234-266)||(18433-18465)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 26444655 - 26444584
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26444655 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 26444584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 46739942 - 46739871
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||  || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46739942 ttgttgtttatgtgaaacattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 46739871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 35659525 - 35659455
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  35659525 tgttgtttatgtgaagcattgttaatgatgatttgaagttgaatgatgatttatagttggaagtatgtgaa 35659455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 19567235 - 19567304
Alignment:
Q  215 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  19567235 gttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 19567304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 12622136 - 12622069
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgt 281  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||    
T  12622136 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgt 12622069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 12622216 - 12622166
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  12622216 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 12622166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 16027372 - 16027442
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| |  ||||||||||||||||||||   |||||||||||| |||||| ||||||||    
T  16027372 tgttgtttatgtgaagcaatgttaatgatgatttgaagttagctgatgatttatagttggaattatgtgaa 16027442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 35659425 - 35659355
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || || ||||||||||||||||||| | |||||||||| | | |||||||||||    
T  35659425 tgttgtttatgtgaagcattgtaaatgatgatttgaagttgaataatgatttatagtcgaaactatgtgaa 35659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 44024856 - 44024906
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44024856 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44024906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 3484517 - 3484485
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  3484517 gttaatgatgattagaagttgattgatgattta 3484485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 21317011 - 21317110
Alignment:
Q  212 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21317011 attgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgctgttgtt 21317110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 21337002 - 21337100
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||| |||| |||||||    
T  21337002 ttgttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaagtatcaatattacttattgttgttgtt 21337100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 1385016 - 1385087
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattgataatttatagttgaaactatgtgaa 1385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 1385117 - 1385187
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||    
T  1385117 tgttgtttatgtgaagcatcgttaatgatgatttgaagttaattgataatttatagttggaactatgtgaa 1385187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 10744580 - 10744630
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  10744580 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 10744630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 21367564 - 21367510
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttata 268  Q
    |||| ||||||| ||| || ||| |||||||||||||||||||||||||||||||    
T  21367564 tgttatttatgtgaagcattgttgatgatgatttgaagttgattgatgatttata 21367510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 1385016 - 1385061
Alignment:
Q  170 ttgttgtttatgtgaagtatcactaaagatgatttgaagttgattg 215  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||    
T  1385016 ttgttgtttatgtgaagcatcgttaatgatgatttgaagttgattg 1385061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 1385109 - 1385161
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||| |||| ||| |||||||||| ||||    
T  1385109 gttgtttatgttgtttatgtgaagcatcgttaatgatgatttgaagttaattg 1385161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 32215770 - 32215802
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  32215770 gttaatgatgattagaagttgattgatgattta 32215802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 311
Target Start/End: Complemental strand, 17206901 - 17206804
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatatatgtattactaattgatgttgtt 311  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||   ||||| |||||| |||||||    
T  17206901 tgttgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattaattgttgttgtt 17206804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 17206811 - 17206740
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  17206811 ttgttgtttatgtgaagcatggtgaatgatgatttgaagttgattgatgatttatagttggagctatgtgaa 17206740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 24545420 - 24545350
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  24545420 tgttgtttatatgaagcattgttaatgatgatttgaagttgatttatgatttatagttggaactatgtgaa 24545350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24549327 - 24549397
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24549327 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24549397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24553953 - 24554023
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24553953 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24554023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24557012 - 24557082
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| | ||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24557012 tgttgtttatatgaagcattgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaa 24557082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 54331675 - 54331738
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatg 280  Q
    ||||||||| ||| || |||||||||||||||||||||| |||||||||||| |||||||||||    
T  54331675 tgtttatgtgaagcatggttaatgatgatttgaagttgaatgatgatttatagttggaactatg 54331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 11191275 - 11191225
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  11191275 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 11191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 12860502 - 12860548
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||    
T  12860502 atgatgatttgaagttgattgatgatttatagttgaaattatgtgaa 12860548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 16180665 - 16180715
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  16180665 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 17206909 - 17206857
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  17206909 gttgtttatgttgtttatgtgaagcatggttaatgatgatttgaagttgattg 17206857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 579 - 651
Alignment:
Q  212 attgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  579 attgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 681 - 751
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  681 tgttgtttatgtgaagcattgttaattatgatttgaagttgattgatgatttatagttggaattatgtgaa 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 23492817 - 23492887
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23492817 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23492887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 23498415 - 23498485
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23498415 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 23498485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 19958208 - 19958277
Alignment:
Q  215 gttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19958208 gttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatatttggaactatgtgaa 19958277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 22555946 - 22555875
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  22555946 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgattatttatagttggaactatgtgaa 22555875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 23492734 - 23492784
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23492734 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23492784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 23498332 - 23498382
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23498332 gttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaa 23498382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 23492809 - 23492861
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  23492809 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 23492861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 23498407 - 23498459
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  23498407 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 23498459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 23991930 - 23991898
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  23991930 gttaatgatgattagaagttgattgatgattta 23991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 34962793 - 34962761
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  34962793 gttaatgatgattagaagttgattgatgattta 34962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 44891388 - 44891318
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44891388 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 44891318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 17904357 - 17904427
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||| |||| ||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17904357 tgttgttaatgtgaagcatggttaatgatgatttgaagtcgattgatgatttatagttggaactatgtgaa 17904427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 24721121 - 24721191
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||  ||||||||||||||||||| |||||||||||||| || ||| ||||||||    
T  24721121 tgttgtttatgtgaagcattattaatgatgatttgaagttaattgatgatttatagttagaattatgtgaa 24721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 45473922 - 45473852
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||  ||||| |||||||||||||| |||||| ||||||||    
T  45473922 tgttgtttatgtgaagcattgttaatgatgattcaaagttaattgatgatttatagttggaattatgtgaa 45473852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 6833033 - 6832986
Alignment:
Q  237 aatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  6833033 aatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 6832986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 44891298 - 44891227
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||  |  || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  44891298 ttgttgtttatgtggaccattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 44891227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 12709875 - 12709839
Alignment:
Q  249 aagttgattgatgatttataattggaactatgtgaaa 285  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  12709875 aagttaattgatgatttataattggaattatgtgaaa 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 14239064 - 14239096
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  14239064 gttaatgatgattagaagttgattgatgattta 14239096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 44891396 - 44891344
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  44891396 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 44891344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 26646438 - 26646366
Alignment:
Q  216 ttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaatat 288  Q
    |||||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26646438 ttgtttatgtgaagcattgttgatgatgatttgaagttgattgatgatttatagttggaactatgtgaaatat 26646366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 6551786 - 6551857
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||  || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551786 ttgttgtttatgtgaaacatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 6551916 - 6551983
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6551916 tgtttatgtgaagcatggttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6551983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 12354922 - 12354851
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    |||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  12354922 tgttgtttatgtgaagcattgttattgatgatttgaagttgattgatgatttatagttggaattatgtgaaa 12354851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 14027168 - 14027218
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  14027168 gttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 14027218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 8834459 - 8834514
Alignment:
Q  220 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaa 275  Q
    |||||| ||| || |||||||||||||||||||| ||||||||| |||| ||||||    
T  8834459 ttatgtgaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaa 8834514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 8505025 - 8505075
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| |||||| ||||||||| |||| ||| |||||||||||    
T  8505025 gttaatgatgattcgaagttaattgatgatgtatagttgaaactatgtgaa 8505075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 19129 - 19200
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  19129 ttgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttatagttggaactaagtgaa 19200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 61518 - 61447
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  61518 ttgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaactatgtgaa 61447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 39669 - 39599
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39669 tgttgtttatgtgaagcattggtaatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 39599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 39569 - 39499
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||| |||||||||||||||||||||||||| |||||||||| ||||    
T  39569 tgttgtttatgtgaagcattgttaatgaagatttgaagttgattgatgatttatagttggaactatatgaa 39499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 8221 - 8291
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  8221 tgttgtttatgtgaagcattgttaatgatgatttgaagttgattgatgatttattgtttgaactatgtgaa 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 8213 - 8265
Alignment:
Q  120 gttgtttatgttgtctatgtgaagtatcattaaagataatttgaagttgattg 172  Q
    |||||||||||||| ||||||||| ||  |||| ||| |||||||||||||||    
T  8213 gttgtttatgttgtttatgtgaagcattgttaatgatgatttgaagttgattg 8265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 2718068 - 2718138
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  2718068 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 2718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 36733872 - 36733942
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  36733872 tgttgtttatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 36733942  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 22473180 - 22473109
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  22473180 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaaa 22473109  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 22473280 - 22473210
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||| |||| ||| || |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  22473280 tgttgttcatgtgaagcattgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 22473210  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 6574350 - 6574414
Alignment:
Q  220 ttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||| || |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  6574350 ttatgtaaagcattgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 6574414  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 18820422 - 18820489
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || |||||||||||||| |||||||||||||||||| | ||||||| |||||||    
T  18820422 tgtttatgtgaagcattgttaatgatgattttaagttgattgatgatttacagttggaacaatgtgaa 18820489  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 36406297 - 36406368
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || ||||||||||||||||| || ||||||||||||||  ||||| ||||||||    
T  36406297 ttgttgtttatgtgaagcattgttaatgatgatttgaaattaattgatgatttatagatggaattatgtgaa 36406368  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 18820339 - 18820389
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  18820339 gttaatgatgatttaaagttgattgatgaattatagttggaactatgtgaa 18820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 16414120 - 16414152
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  16414120 gttaatgatgattagaagttgattgatgattta 16414152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 32121155 - 32121123
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  32121155 gttaatgatgattagaagttgattgatgattta 32121123  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 9744447 - 9744518
Alignment:
Q  213 ttgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||| ||| || | |||||||||||||||||| | |||||||||||| |||||||||||||||    
T  9744447 ttgttgtttatgtgaagcattgctaatgatgatttgaagttaaatgatgatttatagttggaactatgtgaa 9744518  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 9744357 - 9744427
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| ||   |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgattaatgatttatagttggaactatgtgaa 9744427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 15577259 - 15577329
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| ||| || |||||||||||||| ||||| |||||||||||||| ||| || ||||||||    
T  15577259 tgttgtttatgtgaagcattgttaatgatgatttaaagttaattgatgatttatagttgaaattatgtgaa 15577329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 13134276 - 13134326
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||    
T  13134276 gttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaa 13134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 20253970 - 20254015
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtga 283  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||    
T  20253970 atgatgatttgaagttgattgatgatttatagtttgaattatgtga 20254015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 9744357 - 9744400
Alignment:
Q  171 tgttgtttatgtgaagtatcactaaagatgatttgaagttgatt 214  Q
    |||||||||||||||| || ||||| ||||||||||||||||||    
T  9744357 tgttgtttatgtgaagcatgactaatgatgatttgaagttgatt 9744400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 6012 - 6058
Alignment:
Q  238 atgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  6012 atgatgatttgaagttgattgatgatttatagttggaactatgtgaa 6058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 17924 - 17854
Alignment:
Q  214 tgttgtttatgtaaagtatcgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| |||  | |||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  17924 tgttgtttatgtgaagctttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaa 17854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 4850 - 4918
Alignment:
Q  217 tgtttatgtaaagtatcgttaatgatgatttgaagttg-attgatgatttataattggaactatgtgaa 284  Q
    ||||||||| ||| || |||||||| |||||||||||| |||||||||||||| |||||||| ||||||    
T  4850 tgtttatgtgaagcattgttaatgaagatttgaagttgaattgatgatttatagttggaactttgtgaa 4918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 33594 - 33543
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaa 285  Q
    |||||||||||||||||||| | ||||||| |||| |||||| |||||||||    
T  33594 gttaatgatgatttgaagttaaatgatgatgtatagttggaattatgtgaaa 33543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 3184 - 3135
Alignment:
Q  235 ttaatgatgatttgaagttgattgatgatttataattggaactatgtgaa 284  Q
    |||||||||||| |||||| ||||||||| |||| |||||| ||||||||    
T  3184 ttaatgatgattcgaagttaattgatgatgtatagttggaattatgtgaa 3135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 4122 - 4090
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  4122 gttaatgatgattagaagttgattgatgattta 4090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 66627 - 66679
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaat 286  Q
    |||||| ||||||||||||| |||||||||  ||| |||||| ||||||||||    
T  66627 gttaataatgatttgaagttaattgatgatgcatagttggaattatgtgaaat 66679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 18433 - 18465
Alignment:
Q  234 gttaatgatgatttgaagttgattgatgattta 266  Q
    ||||||||||||| |||||||||||||||||||    
T  18433 gttaatgatgattagaagttgattgatgattta 18465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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