View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5146_high_16 (Length: 309)
Name: NF5146_high_16
Description: NF5146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5146_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 5231481 - 5231195
Alignment:
| Q |
18 |
actggtatttacgtagtacacatgcgcctaagattacattaacnnnnnnnnnnttaaactaagcttcaataaagtaacaattttggaccataatcttatc |
117 |
Q |
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| T |
5231481 |
actggtatttacgtagtacacatgtgcctaagattacattaacaaaaaaaaa-tcaaactaagcttcaataaagtaacaattttggaccataatcttatc |
5231383 |
T |
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| Q |
118 |
atgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaggctggctcacattgttttattgctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5231382 |
atgaactaagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctt |
5231283 |
T |
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| Q |
218 |
tatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggtt |
305 |
Q |
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| T |
5231282 |
tatgtaaatttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggtt |
5231195 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 269
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
134 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaggctggctcacattgttttattgctttatgtaaatttttcaa |
233 |
Q |
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||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | || |||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
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| Q |
234 |
atggctccattttggttcatttggaagtcctaatat |
269 |
Q |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
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