View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5146_high_18 (Length: 304)
Name: NF5146_high_18
Description: NF5146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5146_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7413610 - 7413385
Alignment:
| Q |
1 |
catgtttgttaggttaagatagcataatatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaagcttgt |
100 |
Q |
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| T |
7413610 |
catgtttgttaggttaagatagcatagtatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaattcattaagcttgt |
7413511 |
T |
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| Q |
101 |
aagacaactgatatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaaagagttagaa |
200 |
Q |
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| T |
7413510 |
aagacaactgatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagttagaa |
7413411 |
T |
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| Q |
201 |
gatgatgatgttttgaataaaataaa |
226 |
Q |
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| T |
7413410 |
gatgatgatgttttggataaaataaa |
7413385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 7413081 - 7413379
Alignment:
| Q |
2 |
atgtttgttaggttaagat-agcataatatttatgtcatttgaatatcaatttatacagagaga---aaaagaacagctccatgttgaatttattaagct |
97 |
Q |
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| T |
7413081 |
atgtttgttaggttaaaattagcatagtatttatgccatttgaatatcaatttatacaaagagagaaaaaagaatagctccatgttgaattcgttaagct |
7413180 |
T |
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| Q |
98 |
tgtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaaagagtt |
196 |
Q |
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| T |
7413181 |
tgtaagacaactggatatgaaacaaaagtttgaatgagtgattgggcaactaaaaggatcactaactgcgttgaataacac-aagggacaagaaagattt |
7413279 |
T |
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| Q |
197 |
agaagatgatgatg-ttttgaataaaataaagtacttgcagatggaattgaaggaaaagcaagagttccttcaagcatgcgaagagttgaaccaaatgat |
295 |
Q |
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| T |
7413280 |
agaagatgatgaagtttttggataaaataaattctttgcagatggaattgaaagaaaaggaagagttacttcaagcctgcgagggcctgaaccaaatgat |
7413379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 30495558 - 30495734
Alignment:
| Q |
3 |
tgtttgttaggttaa-gatagcataatatttatgtcatttgaatatcaatttata--cagagagaaaaa-gaacagctccatgttgaatttattaagctt |
98 |
Q |
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| T |
30495558 |
tgtttgttaggtcaacgttagcatagtatttatgtcattcaaatatcaatttatatacagggagaaaaaagaacaacttcatgttgaattcgttaagctt |
30495657 |
T |
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| Q |
99 |
gtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataa |
174 |
Q |
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| T |
30495658 |
gtaagacaactggatatgaaacaaaagttggaatgggagattgggcaactaaaaggatcactaattgtgttgaataa |
30495734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 30446936 - 30447068
Alignment:
| Q |
40 |
ttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaagcttgtaagacaact-gatatgaaacaaaagttggaatgagagat |
138 |
Q |
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|||||| || ||||||||||| | |||||||||||||||||| | || | ||| |||||| ||||||||| ||||||||||||||| ||||| ||||| |
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| T |
30446936 |
ttgaatttctatttatacagaaacaaaaagaacagctccatgctaaaatcattcagcttgaaagacaactggatatgaaacaaaagctggaactggagat |
30447035 |
T |
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| Q |
139 |
taggcaactaaaaggattactaactgcgttgaa |
171 |
Q |
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| T |
30447036 |
tcagcaactaaaaggatcactaagtgtgttgaa |
30447068 |
T |
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