View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5146_high_9 (Length: 342)
Name: NF5146_high_9
Description: NF5146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5146_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 122 - 332
Target Start/End: Complemental strand, 5113635 - 5113423
Alignment:
| Q |
122 |
cagtgttaagagcttgcaacattcaatcaacttagctttccgctcctcataggtaagcttcttcagattatacatcttgtgttgtttaggaggatgcttc |
221 |
Q |
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| T |
5113635 |
cagtgttaagagcttgcaacattcaatcaacttagctttccgctcctcataggtaagcttcttcagattatacatcttgtgttgtttaggaggatgcttc |
5113536 |
T |
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| Q |
222 |
tctgatttctttatagaaggatctacatgaatggcatcattaaccttcttgtacagcttctcaaattcatcagcctagattcctttctt--tgtgtttgc |
319 |
Q |
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| T |
5113535 |
tgtgatttctttatagaaggatctacacgaatggcatcattaaccttcttatacagcttctcaaattcatcagcctcgattcctttctttatgcgtttgc |
5113436 |
T |
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| Q |
320 |
taaactgtctctg |
332 |
Q |
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|||| |||||||| |
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| T |
5113435 |
taaattgtctctg |
5113423 |
T |
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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8450790 - 8450858
Alignment:
| Q |
1 |
caacatgtattgattcaaaacaataccaaatagattacatgttacttaatactcacaaatcactgactg |
69 |
Q |
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| T |
8450790 |
caacatgtattgattcaaaacaataccaaatagattacatgttacttaatactcacaaatcactgactg |
8450858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 10463668 - 10463713
Alignment:
| Q |
149 |
caacttagctttccgctcctcataggtaagcttcttcagattatac |
194 |
Q |
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| T |
10463668 |
caacttagctttccgctcctcataggtaagcttcttcagattatac |
10463713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 310
Target Start/End: Original strand, 10463810 - 10463929
Alignment:
| Q |
191 |
atacatcttgtgttgtttaggaggatgcttctctgatttctttatagaaggatctacatgaatggcatcattaaccttcttgtacagcttctcaaattca |
290 |
Q |
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|||| ||||||||||||| ||||| |||||||| |||||||| || | ||||||| || |||| ||| ||| |||||||||||| |||| ||||| || |
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| T |
10463810 |
atacctcttgtgttgttttggaggctgcttctcggatttcttgattgtaggatctgcacgaattgcagcatgaaccttcttgtaaagctcctcaaggcca |
10463909 |
T |
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| Q |
291 |
tcagcctagattcctttctt |
310 |
Q |
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|| |||| |||||||||||| |
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| T |
10463910 |
tctgcctcgattcctttctt |
10463929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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