View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5147-Insertion-1 (Length: 639)
Name: NF5147-Insertion-1
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147-Insertion-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Complemental strand, 43985997 - 43985367
Alignment:
| Q |
8 |
ataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgattttacccggtagttctgcagcagcacatgctacgcagtttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985997 |
ataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgattttacccggtagttctgcagcagcacatgctacgcagtttct |
43985898 |
T |
|
| Q |
108 |
gtcatggtttctaacacgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985897 |
gtcatggtttctaacacgaaggctcgtgttcggaacagagcaacagaagaataaagcagcttacgagattcgtttgttaacaaggtcaagcattttcaac |
43985798 |
T |
|
| Q |
208 |
agagcttgtttgattgaagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985797 |
agagcttgtttgattgaagttggaactgtgccaccactgttggatcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactga |
43985698 |
T |
|
| Q |
308 |
agctttcaaagtatgcaaccgggcctgaaaatataatagaccataacggtttaaatcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985697 |
agctttcaaagtatgcaaccgggcctgaaaatataatagaccataacggtttaaagcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccg |
43985598 |
T |
|
| Q |
408 |
tcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattg |
507 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985597 |
tcaaattgcagcagctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattg |
43985498 |
T |
|
| Q |
508 |
gctaaagaaggaacaaccctgcgggaaaaagaatgcagtggttgccatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggt |
607 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985497 |
gctaaagaaggaacaa-cctgcggaaaaaagaatgcagtggttgcgatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggt |
43985399 |
T |
|
| Q |
608 |
gctgttcacgcgcttgtttctattttgaatac |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43985398 |
gctgttcacgcgcttgtttctattttgaatac |
43985367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 35205912 - 35205835
Alignment:
| Q |
400 |
gaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
477 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||| || || |||||||||||| || |||||||||||||| |||||| |
|
|
| T |
35205912 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
35205835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 35206170 - 35206124
Alignment:
| Q |
136 |
ttcggaacagagcaacagaagaataaagcagcttacgagattcgttt |
182 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||| ||||||||||| |
|
|
| T |
35206170 |
ttcggaacagaggaacagaaaaacaaagcagcttatgagattcgttt |
35206124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University