View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147-Insertion-3 (Length: 253)
Name: NF5147-Insertion-3
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147-Insertion-3 |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 42157896 - 42157759
Alignment:
| Q |
8 |
ttttagatacagagtttgactatctatggaatattgtattaacgttctatggtaggactaataatagagatgattgggatgatagtcaaatacaccggtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42157896 |
ttttagatacagagtttgactatctatggaatattgtattaacgttctatggtaggactaataatagagatgattgggatgatagtcaaatacaccggtt |
42157797 |
T |
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| Q |
108 |
tgcattttgtaacataaaattcataactatataataaa |
145 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
42157796 |
tgcattttgtaacataaaattcataactatatgataaa |
42157759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 10305613 - 10305506
Alignment:
| Q |
146 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
245 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10305613 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
10305514 |
T |
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| Q |
246 |
tatctctc |
253 |
Q |
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|||||||| |
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| T |
10305513 |
tatctctc |
10305506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 51005434 - 51005327
Alignment:
| Q |
146 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
245 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51005434 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtcataccatt |
51005335 |
T |
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| Q |
246 |
tatctctc |
253 |
Q |
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|||||||| |
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| T |
51005334 |
tatctctc |
51005327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 4251232 - 4251348
Alignment:
| Q |
138 |
ataataaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttg-ttttatctctttttggt |
236 |
Q |
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|||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4251232 |
ataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggt |
4251331 |
T |
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| Q |
237 |
gataccatttatctctc |
253 |
Q |
| |
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|||||||||||||||| |
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| T |
4251332 |
cataccatttatctctc |
4251348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 4246071 - 4246180
Alignment:
| Q |
144 |
aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca |
243 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
4246071 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacatgagaaaagctcaaaagcggtgatttctttgttttatctctttttggtcatacca |
4246170 |
T |
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| Q |
244 |
tttatctctc |
253 |
Q |
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|||||||||| |
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| T |
4246171 |
tttatctctc |
4246180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 143220 - 143110
Alignment:
| Q |
142 |
taaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatac |
241 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
143220 |
taaaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcatatgagaaaagttcaaaagcggtgatttccttgttttatctctttttggtcatac |
143121 |
T |
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| Q |
242 |
catttatctct |
252 |
Q |
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||||||||||| |
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| T |
143120 |
catttatctct |
143110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 13761685 - 13761578
Alignment:
| Q |
146 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
245 |
Q |
| |
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||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
13761685 |
ggaaaatgcttaacatcacgacaaaagtttcacaaatatcacacgagaaaagctcaaaagtggtgatttccttgttttatctctttttggtcataccatt |
13761586 |
T |
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| Q |
246 |
tatctctc |
253 |
Q |
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|||||||| |
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| T |
13761585 |
tatctctc |
13761578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 1814022 - 1814122
Alignment:
| Q |
144 |
aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca |
243 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
1814022 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagtttaaaaacggtgatttccttgttttatttctttttggtcatacca |
1814121 |
T |
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| Q |
244 |
t |
244 |
Q |
| |
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| |
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|
| T |
1814122 |
t |
1814122 |
T |
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