View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147-Insertion-6 (Length: 253)
Name: NF5147-Insertion-6
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 16909594 - 16909763
Alignment:
| Q |
52 |
tctaccaagaggtgatttcaaaccctagtttttctcatttcaatatctggttaacttttctaccaagaggtgatttcaaaccctagtttttctcatttca |
151 |
Q |
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| T |
16909594 |
tctagcaagaggtaatttcaaaccctagtttttctcatttcaatatctcgttaacttttctaccaagaggtgatttcaaaccctagtttttctcatgtca |
16909693 |
T |
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| Q |
152 |
atatctggttaacttttctaccaagaggtgatttcaaaccctagtttttctcatgtcaatatctggttaa |
221 |
Q |
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| T |
16909694 |
atagctggttaatttttctatcaagaggtgatttcaaaccctagttcttctcatgccattatctggttaa |
16909763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 110 - 253
Target Start/End: Original strand, 16909594 - 16909737
Alignment:
| Q |
110 |
tctaccaagaggtgatttcaaaccctagtttttctcatttcaatatctggttaacttttctaccaagaggtgatttcaaaccctagtttttctcatgtca |
209 |
Q |
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| T |
16909594 |
tctagcaagaggtaatttcaaaccctagtttttctcatttcaatatctcgttaacttttctaccaagaggtgatttcaaaccctagtttttctcatgtca |
16909693 |
T |
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| Q |
210 |
atatctggttaatttttctatcaagaggtgatttcaaaccctag |
253 |
Q |
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| T |
16909694 |
atagctggttaatttttctatcaagaggtgatttcaaaccctag |
16909737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 16909607 - 16909767
Alignment:
| Q |
7 |
aatttcaaaccctagtttttctcatttcaatatctggttaacttttctaccaagaggtgatttcaaaccctagtttttctcatttcaatatctggttaac |
106 |
Q |
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| T |
16909607 |
aatttcaaaccctagtttttctcatttcaatatctcgttaacttttctaccaagaggtgatttcaaaccctagtttttctcatgtcaatagctggttaat |
16909706 |
T |
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| Q |
107 |
ttttctaccaagaggtgatttcaaaccctagtttttctcatttcaatatctggttaacttt |
167 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
16909707 |
ttttctatcaagaggtgatttcaaaccctagttcttctcatgccattatctggttaacttt |
16909767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 16909793 - 16909839
Alignment:
| Q |
38 |
atctggttaacttttctaccaagaggtgatttcaaaccctagttttt |
84 |
Q |
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| T |
16909793 |
atctggttaaattttctaacaagaggtgatttcaaaccctagttttt |
16909839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 16909793 - 16909839
Alignment:
| Q |
96 |
atctggttaacttttctaccaagaggtgatttcaaaccctagttttt |
142 |
Q |
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| T |
16909793 |
atctggttaaattttctaacaagaggtgatttcaaaccctagttttt |
16909839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 16909793 - 16909839
Alignment:
| Q |
154 |
atctggttaacttttctaccaagaggtgatttcaaaccctagttttt |
200 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
16909793 |
atctggttaaattttctaacaagaggtgatttcaaaccctagttttt |
16909839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 16909793 - 16909834
Alignment:
| Q |
212 |
atctggttaatttttctatcaagaggtgatttcaaaccctag |
253 |
Q |
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| T |
16909793 |
atctggttaaattttctaacaagaggtgatttcaaaccctag |
16909834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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