View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5147_high_14 (Length: 209)
Name: NF5147_high_14
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 3873981 - 3874157
Alignment:
| Q |
17 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3873981 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
3874080 |
T |
|
| Q |
117 |
gtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3874081 |
gtgaagctcttatccaaaaaagctgataaagatatgactaaaaccaatacaaaaagtaacattggtaaccataaagt |
3874157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 3884507 - 3884685
Alignment:
| Q |
14 |
cagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3884507 |
cagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaa-caccaactctatgaatccaattacgatcaaac |
3884605 |
T |
|
| Q |
114 |
cttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3884606 |
cttgtgaagctcttatctaaaaaagctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagt |
3884685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 48453465 - 48453561
Alignment:
| Q |
17 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
113 |
Q |
| |
|
||||| ||| |||||||||| |||||| |||| | ||| ||| | || |||||| || || || |||| ||||||||||||||| | |||||||||| |
|
|
| T |
48453465 |
agatgatttccacttcaaaataagaaaaagaacagtaataatcacaaaaataccgcctgaggagccacaaactctatgaatccagtaacgatcaaac |
48453561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University