View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_high_6 (Length: 258)
Name: NF5147_high_6
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 5882540 - 5882329
Alignment:
| Q |
26 |
catcagtgctcatgcaatcttacgtccatatgcaatttaattatgaacatagagagagattattgacctgtagattagtgaacggtagcctttatcacta |
125 |
Q |
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| T |
5882540 |
catcagtgctcatgcaatcttacgtccatatgcaatttaattatgaacatagagagagattattgacctgtagattagtgaacggtagcctttatcacta |
5882441 |
T |
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| Q |
126 |
agatttacatgataatcaaagctgttagagatatctcccgtataaggtattctatcagaacgacgactccattttccaatagttccctgcaacacatgca |
225 |
Q |
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| T |
5882440 |
agatttacatgataatcaaagctgttagagatatctcccgtataaggtattctatcagaacgacgactccattttccaatagttccctgcaacacatgca |
5882341 |
T |
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| Q |
226 |
accaaatgagta |
237 |
Q |
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| T |
5882340 |
accaaacgagta |
5882329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 5886289 - 5886137
Alignment:
| Q |
68 |
atgaacatagagagagattattgacctgtagattagtgaacggtagcctttatcactaagatttacatgataatcaaagctgttagagatatctcccgta |
167 |
Q |
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| T |
5886289 |
atgaacatagagaaagacgattgacctgtagattagtgaacggtagcctttatcactaagatttacatgataatcaa-----------atatccactgta |
5886201 |
T |
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| Q |
168 |
taaggtattctatcagaacgacgactccattttccaatagttccctgcaacacatgcaaccaaa |
231 |
Q |
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| T |
5886200 |
taaggtatattgtcggaacaacgactccattttccaatgcttccctgcaacacatgcaaccaaa |
5886137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 5866785 - 5866698
Alignment:
| Q |
74 |
atagagagagattattgacctgtagattagtgaacggtagcctttatcactaagatttacatgataatcaaagctgttagagatatct |
161 |
Q |
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| T |
5866785 |
atagagaaagattattgacctgtaaattagtgaacgaatgccttttctactgagatttaccagataatcatagctgttggggatatct |
5866698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 5860157 - 5860081
Alignment:
| Q |
84 |
attattgacctgtagattagtgaacggtagcctttatcactaagatttacatgataatcaaagctgttagagatatc |
160 |
Q |
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| T |
5860157 |
attactgacttgtaaattagtgaacgaatgccttttctactgagatttacatgataatcatagctgttagggatatc |
5860081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 46176935 - 46177000
Alignment:
| Q |
87 |
attgacctgtagattagtgaacggtagcctttatcactaagatttacatgataatcaaagctgtta |
152 |
Q |
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| T |
46176935 |
attgacctgtatattaatgaacgatagccttttctgctaagatttacatgatactcaaagctgtta |
46177000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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