View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5147_low_10 (Length: 250)

Name: NF5147_low_10
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5147_low_10
NF5147_low_10
[»] chr1 (13 HSPs)
chr1 (33-243)||(6368705-6368915)
chr1 (11-186)||(6373579-6373753)
chr1 (22-183)||(6337236-6337397)
chr1 (82-186)||(6422251-6422355)
chr1 (22-186)||(6361142-6361305)
chr1 (11-186)||(6382867-6383047)
chr1 (45-184)||(6416449-6416588)
chr1 (47-166)||(6350327-6350447)
chr1 (183-242)||(6373818-6373877)
chr1 (45-101)||(6405020-6405076)
chr1 (45-158)||(6392005-6392118)
chr1 (182-242)||(6383114-6383174)
chr1 (45-101)||(6400399-6400455)
[»] chr3 (1 HSPs)
chr3 (75-186)||(5336034-5336145)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 6368705 - 6368915
Alignment:
Q  33 ttatcaagaaatgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368705 ttatcaagaaatgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtg 6368804  T
Q  133 ttatggtgagttcttcccttttgtgattcttaatttatctcccaaataatgttggagtatattaatttttagttaaactgcattcatctttttatgtatg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368805 ttatggtgagttcttcccttttgtgattcttaatttatctcccaaataatgttggagtatattaatttttagttaaactgcattcatctttttatgtatg 6368904  T
Q  233 gaggatggtac 243  Q
    |||||||||||    
T  6368905 gaggatggtac 6368915  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 6373579 - 6373753
Alignment:
Q  11 cacagaggcagcactgtcaaagttatcaagaaatgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacg 110  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||| || | |||||| |||||||||||||||||||||| |||| |    
T  6373579 cacagaggcagcactgtcaaagtcatcaagaaaggatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaag 6373678  T
Q  111 tttcatgtcagtggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctcccaaataatgttg 186  Q
    ||   |||| ||||||||||| || ||||| ||| ||||||||| | ||| ||||||||  |||||||||||||||    
T  6373679 ttcagtgtcggtggttcatgtattctggtgtgttgttccctttt-ttatttttaatttacgtcccaaataatgttg 6373753  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 6337236 - 6337397
Alignment:
Q  22 cactgtcaaagttatcaagaaatgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcag 121  Q
    |||| ||||||||||||  | |||||||| |||||||||  ||||||||| | |||||| |||||||||||||||||||||||||||| ||  |||||||    
T  6337236 cactatcaaagttatcagcacatgatgagaaaaagatagcccaatcatttacgtcctcttttccatattttgttaaaataatcaaaaccttcaatgtcag 6337335  T
Q  122 tggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctcccaaataatg 183  Q
    |||||| | |  | ||||||||| || |||||||| |||  |||||||||||||||||||||    
T  6337336 tggttcgtatactctggtgagttgtttccttttgtcatttataatttatctcccaaataatg 6337397  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 6422251 - 6422355
Alignment:
Q  82 ttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctcccaaataa 181  Q
    |||||||||||||||||||||||||||||||  |||||  |||| || || || ||||||| | ||||| |||||||||||||||||| |||||||||||    
T  6422251 ttccatattttgttaaaataatcaaaacgttcaatgtcgatggtccacgtattctggtgaggtgttcccctttgtgattcttaatttagctcccaaataa 6422350  T
Q  182 tgttg 186  Q
    |||||    
T  6422351 tgttg 6422355  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 6361142 - 6361305
Alignment:
Q  22 cactgtcaaagttatcaagaaatgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcag 121  Q
    |||||||||||||||||  | ||| |||| || ||||||  ||||||||| | |||||| |||||||||||||||||||||| ||||| ||  ||||       
T  6361142 cactgtcaaagttatcaccacatgctgagaaagagatagcccaatcatttacctcctcttttccatattttgttaaaataatgaaaacattcaatgttga 6361241  T
Q  122 tggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctcccaaataatgttg 186  Q
      || || || || ||||||||| || |||||||||||||| |||||| ||||||||||||||||    
T  6361242 acgtccacgtattctggtgagttgtt-ccttttgtgattctcaatttacctcccaaataatgttg 6361305  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 6382867 - 6383047
Alignment:
Q  11 cacagaggcagcactgtcaaagttatcaagaa---atgatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaa 107  Q
    ||||||||||||||||||||||||||||  |    ||| |||| |||||||||   |||||||| | |||||| |||| |||||||||||||| ||||||    
T  6382867 cacagaggcagcactgtcaaagttatcatcatcgcatgctgagaaaaagatagccgaatcatttacctcctcttttccttattttgttaaaatgatcaaa 6382966  T
Q  108 acgtttcatgtcagtggttcatgtgttatggtgagttcttccc--ttttgtgattcttaatttatctcccaaataatgttg 186  Q
    |||||  |||||  |||| || || || ||||||||| || ||  |||||| |||| ||||||  ||||||||||||||||    
T  6382967 acgttcaatgtcgatggtccacgtattctggtgagttttttccttttttgtaattcataattttcctcccaaataatgttg 6383047  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 6416449 - 6416588
Alignment:
Q  45 gatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagtt 144  Q
    |||||| |||||| ||  ||||||||| | |||||| |||||||||||||||||||| | |||||     || ||| || |||| ||  |||||||||||    
T  6416449 gatgagaaaaagacagcccaatcatttacctcctcttttccatattttgttaaaatatttaaaaccggcgatatcaatgtttcacgtactatggtgagtt 6416548  T
Q  145 cttcccttttgtgattcttaatttatctcccaaataatgt 184  Q
     |||||||||||||||||| ||||| ||||||||||||||    
T  6416549 gttcccttttgtgattctttatttacctcccaaataatgt 6416588  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 6350327 - 6350447
Alignment:
Q  47 tgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagttct 146  Q
    ||||||||||||||  || |||||||| |||||  |||||||||||||||||||||| ||| | ||  |||||||||||||  ||  ||| ||||||| |    
T  6350327 tgaggaaaagatagcccagtcattttcctcctcatttccatattttgttaaaataattaaagccttcaatgtcagtggttctcgtactattgtgagttgt 6350426  T
Q  147 tccc-ttttgtgattcttaat 166  Q
    |||| |||||||||| |||||    
T  6350427 tccctttttgtgatttttaat 6350447  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 6373818 - 6373877
Alignment:
Q  183 gttggagtatattaatttttagttaaactgcattcatctttttatgtatggaggatggta 242  Q
    |||||||||||||||||||||   |||| |||||||||||||||| ||||||||||||||    
T  6373818 gttggagtatattaatttttaccgaaacagcattcatctttttatatatggaggatggta 6373877  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 6405020 - 6405076
Alignment:
Q  45 gatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaata 101  Q
    |||||| |||||||||  ||||||||| |||| ||| ||||||||||||||||||||    
T  6405020 gatgagaaaaagatagcccaatcatttacttcttcttttccatattttgttaaaata 6405076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 6392005 - 6392118
Alignment:
Q  45 gatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagtt 144  Q
    |||||| |||||||||  || | |||| | |||||| |||||||||||||||  ||||| ||| | |   || ||||||||||| ||  | |||||||||    
T  6392005 gatgagaaaaagatagcccacttatttacctcctcttttccatattttgttatgataatgaaatcctgcaatatcagtggttcacgtactctggtgagtt 6392104  T
Q  145 cttcccttttgtga 158  Q
    ||||||||||||||    
T  6392105 cttcccttttgtga 6392118  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 6383114 - 6383174
Alignment:
Q  182 tgttggagtatattaatttttagttaaactgcattcatctttttatgtatggaggatggta 242  Q
    ||||||||||||||||||||||   |||| | |||  || |||||||||||||||||||||    
T  6383114 tgttggagtatattaatttttaccgaaacagtatttctccttttatgtatggaggatggta 6383174  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 6400399 - 6400455
Alignment:
Q  45 gatgaggaaaagatagtacaatcattttcttcctctgttccatattttgttaaaata 101  Q
    |||||| |||||||||   |||||||| | |||||| ||||||||||||||||||||    
T  6400399 gatgagaaaaagatagccgaatcatttacctcctcttttccatattttgttaaaata 6400455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 5336034 - 5336145
Alignment:
Q  75 tcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctcc 174  Q
    |||||| ||||||||||||||||||| ||||||| |||  |||||  ||||  |||| || ||||||||| ||||||||| |||||||||| ||  ||||    
T  5336034 tcctcttttccatattttgttaaaatgatcaaaatgttcaatgtcgatggtcgatgtattctggtgagtttttcccttttttgattcttaactttcctcc 5336133  T
Q  175 caaataatgttg 186  Q
    ||||||||||||    
T  5336134 caaataatgttg 5336145  T

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