View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_14 (Length: 236)
Name: NF5147_low_14
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 35037301 - 35037090
Alignment:
| Q |
4 |
aatagtctattacaacaacgaatatttaatcactaaatatattagactatttgaaaataatgagatcataattaatattagannnnnnnngagagggaga |
103 |
Q |
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| T |
35037301 |
aatagtctattacaacaacgaatatttaatcgctaaatatattagactatttgaaaataatgagatcataattaatattagattttttt-gagagggaga |
35037203 |
T |
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| Q |
104 |
tataagtaatatattaatattagannnnnnnnnnnatagcggagatcatcatattctataaaatttaaaattaaatcatgttaattttgatatataagag |
203 |
Q |
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|| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35037202 |
ta--attaatatattaatattagatttttttt----tagcggagatcatcatattctataaaatttaaaattaaatcatgttaattttgatagataagag |
35037109 |
T |
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| Q |
204 |
gttataattattattttat |
222 |
Q |
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||||||||||||||||||| |
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| T |
35037108 |
gttataattattattttat |
35037090 |
T |
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