View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_2 (Length: 606)
Name: NF5147_low_2
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 16797558 - 16798148
Alignment:
| Q |
1 |
cacaaattacgataaacatagagtttcaatggagatttactaagatgaggctggcaaagactcctaagaagtagatatgtggatttaaccgtaaaacacc |
100 |
Q |
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| T |
16797558 |
cacaaattacgataaacatagagtttcaatggagatttactaagatgaggctggcaaagactcctaagaagtagatatgtggatttaaccgtaaaacacc |
16797657 |
T |
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| Q |
101 |
ccccattctctggtaaccattcccaagtgtcacctcccactgacaatgtaattccatcaacagccacccttgattcctctactaaagcctcctctcccaa |
200 |
Q |
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| T |
16797658 |
ccccattctctggtaaccattcccaagtgtcacctcccactgacaatgtaattccatcaacagccacccttaattcctctactaaagcctcctctcccaa |
16797757 |
T |
|
| Q |
201 |
gtgaagaattcccaacgccacccgagcctccacggccaatgattatcctcccactcccctacctctcccaccttagcgtcctttttgtcagagaatctaa |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
16797758 |
gtgaagaattcccaatgccacccgagcctccacggccaatgattatcctcccactcccctacctctcccaccttagcttcttttttgtcagagaatctaa |
16797857 |
T |
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| Q |
301 |
acaatcaagtaaatcaaatgttttggagcgcattcccgatccaaatgaccttccaaagtaacgttcccatcacagtctatttacccctaaaataaaaatg |
400 |
Q |
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||||||||| ||||||||||||| | ||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
16797858 |
acaatcaaggaaatcaaatgtttagcagctcgttcccgatccaaatgaccttccaaagtgacgtacccatcacagtctatttacccctaaaataaaaatg |
16797957 |
T |
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| Q |
401 |
ttgcaactgtacttc-tttacccttttttcttctcattatccttttgtttctggctggtcacacaatgtgaatattcataatcatgagctttgttgatta |
499 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
16797958 |
ttgcaactgtacttcttttgcccttttttcttctcattatccttttgtttctggctggccacacaatgtgaatattcataatcatgaactttgttgatta |
16798057 |
T |
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| Q |
500 |
ctatcgagtgtttcttaactttgcaaaaaatttgtaacttcacagcaggnnnnnnngctcatgaagtgatttattttgtattcattgttct |
590 |
Q |
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| T |
16798058 |
ctatcgagtgtttcttaactttgcaaaaaaattgtaactttacagcaggaaaaaaagctcatgaagtgatttattttgtattcattgttct |
16798148 |
T |
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