View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5147_low_3 (Length: 604)
Name: NF5147_low_3
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_3 |
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| [»] chr8 (6 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 58 - 604
Target Start/End: Complemental strand, 28187565 - 28187019
Alignment:
| Q |
58 |
ggtatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaac |
157 |
Q |
| |
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||||||||| |||| || ||||||||||||| |||||| | |||||||||||||||||||| | |||| ||||||| |||||||| |||||||||||| |
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| T |
28187565 |
ggtatcactgactccctattggaacaacacagagatgcgcagtttcaacttgaaaatgctttacaaatagaagaagaatattggagggagaaatctaaag |
28187466 |
T |
|
| Q |
158 |
ttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtga |
257 |
Q |
| |
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|||||||||||| |||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
28187465 |
ttgcttggcatttaaatggagataggaacaccaaatattaccatagactaaccaaaatcaaaaacacctccaaactcgtaactaccctcatgaatggtga |
28187366 |
T |
|
| Q |
258 |
tgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctactaacaatgttgtgcaggatttgcaagctaat |
357 |
Q |
| |
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|||||||||||| |||| || |||||||||||||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
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| T |
28187365 |
tgatatggtttacaaccctgaggaaatatcaagtctcattactaaccactttaaaaatatttttgttactaacaatgttgtgcaggatttgcaggttaat |
28187266 |
T |
|
| Q |
358 |
caattgatatatgactttattccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctag |
457 |
Q |
| |
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||| ||||| | |||| |||||| ||||||||| || |||||||||||||| | || || ||||||||| || | ||||| ||||| | |||||||| |
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| T |
28187265 |
caactgatagaagactccattcctaatctcattactgaagatgtgaacaatcttctaacaagacttcctactgcatcagagatccatcaagttgtgctag |
28187166 |
T |
|
| Q |
458 |
caatgaacaaggatggtgcacctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagattt |
557 |
Q |
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||||||| ||||| || || || ||||||||||||||||||| ||||||| ||||| ||||| ||| |||||||| |||||||| || |||||| ||| |
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| T |
28187165 |
caatgaataaggagggagcccccagtccagatggttttggtgcggtttttttccaaaattactgggacattgtgaaaaatgatgtaattaatgcaatttt |
28187066 |
T |
|
| Q |
558 |
agtgttatttaccagagattggattcttcccaacttcaatgcaaaca |
604 |
Q |
| |
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|| ||| ||||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
28187065 |
agagttctttactagagattggattctccccaacttcaatgcaaaca |
28187019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 14720288 - 14720578
Alignment:
| Q |
7 |
agagttgctgaacaaaatgttgctcaactgcaatctgatatggatatcaacggtatcactaactctcttttggaacaacacaaagatgcttaatttcaac |
106 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14720288 |
agagttgctgaacaaaatcttgctcaactgcaatctgatatggataccaatggtatcactaactctcttttggaacaacacaaagatgctcaatttcaac |
14720387 |
T |
|
| Q |
107 |
ttgaaaatgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
14720388 |
ttgaaaatgctttgctaatataagaagattattggagagagaaatctaaagttgcttggtattcaaatggagacagaaataccaaatattaccatagact |
14720487 |
T |
|
| Q |
207 |
aaccaaaat-caaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
296 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14720488 |
aaccaaaataaaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
14720578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 368 - 601
Target Start/End: Original strand, 14720591 - 14720824
Alignment:
| Q |
368 |
atgactttattccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14720591 |
atgactttattccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatatgctagcaatgaacaa |
14720690 |
T |
|
| Q |
468 |
ggatggtgcacctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagtgttattt |
567 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||| |
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|
| T |
14720691 |
ggatggcgcatctggtccagatggttatggtgcaagtttttcccaaacttactgggagattgtgaagaatgatgtcatcattgcagttttagatttattt |
14720790 |
T |
|
| Q |
568 |
accagagattggattcttcccaacttcaatgcaa |
601 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
14720791 |
accagagattggattctttccaacttcaatgcaa |
14720824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 128 - 350
Target Start/End: Complemental strand, 19217112 - 19216890
Alignment:
| Q |
128 |
aagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctc |
227 |
Q |
| |
|
||||||| || ||||| || ||||| ||| ||||||||| | | |||| | ||||| ||||| | || ||| |||||| ||||||||| ||| | || |
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|
| T |
19217112 |
aagaagaatactggagggaaaaatccaaatgtgcttggcacttagatggtgatagaaacaccaagtttttccatagactatccaaaatcagaaactcttc |
19217013 |
T |
|
| Q |
228 |
caaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctact |
327 |
Q |
| |
|
|||||||| | | |||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||| |
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| T |
19217012 |
taaactcattaacagcctcatgaatggtgatgacatggttactgacccggaggaaatatcaagtctcattacaaatcactttaaaaatattttttccact |
19216913 |
T |
|
| Q |
328 |
aacaatgttgtgcaggatttgca |
350 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
19216912 |
aacaatgttgtgcaggaattgca |
19216890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 12114273 - 12114338
Alignment:
| Q |
173 |
atggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataa |
238 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
12114273 |
atggagacagaaacaccaaatatttccacagactaaccaaaaaaaaacacacctccaaactcataa |
12114338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 350
Target Start/End: Complemental strand, 18924293 - 18924073
Alignment:
| Q |
130 |
gaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctcca |
229 |
Q |
| |
|
||||||| ||||||||| |||||||| | ||||||||| | ||||| | |||||| || ||| | ||| |||||||||||||||||||| ||||| | |
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|
| T |
18924293 |
gaagatttttggagagaaaaatctaaggtagcttggcatgctaatggggacagaaacactcgatacttccaaagactaaccaaaatcaaaaacacctcta |
18924194 |
T |
|
| Q |
230 |
aactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctactaa |
329 |
Q |
| |
|
||||||| ||| || | | | |||| ||| | ||| || ||| || || ||||||||||| ||| ||||| ||||| |||||||||||| | ||||| |
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|
| T |
18924193 |
aactcatcacttccattaaggatggggataacatgattactgagccaaatttaatatcaagtcacattacaaaccacttcaaaaatattttttcaactaa |
18924094 |
T |
|
| Q |
330 |
caatgttgtgcaggatttgca |
350 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
18924093 |
tttttctgtgcaggatttgca |
18924073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 79 - 604
Target Start/End: Original strand, 7572684 - 7573209
Alignment:
| Q |
79 |
gaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggag |
178 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| | | || ||||||| |||||||| |||||||||||| || ||||||||| |||||||| |
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|
| T |
7572684 |
gaacaacacaaagatgcgcagtttcaacttgaaaatgctttacaattagaagaagaatattggagggagaaatctaaagttacttggcatttaaatggag |
7572783 |
T |
|
| Q |
179 |
tcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccgga |
278 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || |
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|
| T |
7572784 |
atagaaacaccaaatattaccatagactgaccaaaatcaaaaacacctccaaactgataactaccctcatgaatgatgatgatatagtttatgaccctga |
7572883 |
T |
|
| Q |
279 |
tcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctactaacaatgttgtgcaggatttgcaagctaatcaattgatatatgactttatt |
378 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |||||| |||||| | |||| ||| |
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|
| T |
7572884 |
ggaaatatcaagtctcattacaaatcacttcaaaaatatttttgctactaacaatgttgtgcaggatttgtaggttaatcatttgatagaagactccatt |
7572983 |
T |
|
| Q |
379 |
ccttctctcattacagatgatgtgaacaatctcttgaccaggcttcctactccaactgagattcatcatgatgtgctagcaatgaacaaggatggtgcac |
478 |
Q |
| |
|
||| ||||||||| || ||||| || ||||| |||| || ||||||||| || | ||||||||||| | ||||||| ||||||||||||| || || | |
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|
| T |
7572984 |
cctaatctcattactgaagatgtaaataatctactgacaagacttcctacttcatcagagattcatcaagctgtgctatcaatgaacaaggagggagctc |
7573083 |
T |
|
| Q |
479 |
ctggtccagatggttttggtgcagttttttcccaaacttacttggagattgtgaagaatgatgtcatcaatgcagatttagtgttatttaccagagattg |
578 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||| ||| | ||| |||||| | |||||||| || ||||||| ||| | ||| ||||| |||||||| |
|
|
| T |
7573084 |
caggtccagatggttttggtgcggtttttttccaaagttattgggacattgtggaaaatgatgtaattaatgcagttttggagttctttacaagagattg |
7573183 |
T |
|
| Q |
579 |
gattcttcccaacttcaatgcaaaca |
604 |
Q |
| |
|
|||||| |||||||||||||| |||| |
|
|
| T |
7573184 |
gattctccccaacttcaatgccaaca |
7573209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 128 - 331
Target Start/End: Original strand, 10009964 - 10010167
Alignment:
| Q |
128 |
aagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctc |
227 |
Q |
| |
|
||||||| |||||||| |||||||| ||| |||||||||| ||| | |||| ||||||||||||| | |||| |||| ||||||||||||| || || |
|
|
| T |
10009964 |
aagaagaatattggagggagaaatccaaagttgcttggcactcagaaggagatcgaaataccaaatactttcacaaactatccaaaatcaaaaacacttc |
10010063 |
T |
|
| Q |
228 |
caaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttgctact |
327 |
Q |
| |
|
||||||||||| || |||||||| ||||||| | ||||||| ||| || | ||||||||||||| ||||||| |||| ||||||||||||||| || || |
|
|
| T |
10010064 |
caaactcataaatagcctcatgattggtgataacatggtttctgatccacaacaaatatcaagtcacatcacagatcattttaaaaatattttttcttct |
10010163 |
T |
|
| Q |
328 |
aaca |
331 |
Q |
| |
|
|||| |
|
|
| T |
10010164 |
aaca |
10010167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 8787916 - 8787872
Alignment:
| Q |
486 |
agatggttttggtgcagttttttcccaaacttacttggagattgt |
530 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| ||||||||| |
|
|
| T |
8787916 |
agatggttttggtgcagtattttaccaaacatactgggagattgt |
8787872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 22562032 - 22562183
Alignment:
| Q |
199 |
cacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatca |
298 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||| || |||||||||||||||| | ||| || ||| | || |||| ||||||| ||||| |
|
|
| T |
22562032 |
cacagactggccaaaatcaaaaacacatccaaactcataaatagcctcatgaatggtgataacatgattactgatctagaggaaatttcaagtcacatca |
22562131 |
T |
|
| Q |
299 |
caaatcactttaaaaatatttttgctactaacaatgttgtgcaggatttgca |
350 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
22562132 |
caaatcacttcaaaaatatttttgctactaacattgttgtgaagaatttgca |
22562183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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