View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_4 (Length: 502)
Name: NF5147_low_4
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 49552655 - 49553129
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaatgcagttatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
100 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552655 |
gtaacatctgctactagattaccgaaatgcagtcatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcaggt |
49552754 |
T |
|
| Q |
101 |
tcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552755 |
tcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttgaa |
49552854 |
T |
|
| Q |
201 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49552855 |
gcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttaccatg |
49552954 |
T |
|
| Q |
301 |
tcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttccattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552955 |
tcttccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttggaatttccattc |
49553054 |
T |
|
| Q |
401 |
atttatataaatttagatactcgcg---nnnnnnnnntcattgtaaatacatgaaactcaagcattgactacgactgtgct |
478 |
Q |
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| T |
49553055 |
attt------atttagatacttgcgagaaaaaaaaaatcattgtaaatacatgaaactcaagcattgactacgaccgtgct |
49553129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 203 - 397
Target Start/End: Original strand, 49537536 - 49537730
Alignment:
| Q |
203 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
302 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |
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| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
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| Q |
303 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttcca |
397 |
Q |
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| T |
49537636 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttggaatttcca |
49537730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 49537361 - 49537541
Alignment:
| Q |
1 |
gtaacatctgctaccagattaccgaaa-tgcagttatgacaaatgtgtaggcc-atgggtacatcgttacctctacatgaaatatatgttggttcagcag |
98 |
Q |
| |
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||||| ||||||| ||||||| |||| ||||||||||| |||||| ||| | | ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
49537361 |
gtaacttctgctagtagattactgaaactgcagttatgagaaatgtatagccagaagggtacatcaatacctctaaatgaaatatatgttggttcagcag |
49537460 |
T |
|
| Q |
99 |
gttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaa-agtctgaacatt |
183 |
Q |
| |
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|||| || || | ||||| |||| ||||| | ||||||| |||||||||||| |||||| ||| |||| |||||||||||| |
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| T |
49537461 |
attcaata-tcatataata----ctttccatttgctttcttgagttactttcacaattaaaaaactgatacaagagtctgaacatt |
49537541 |
T |
|
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