View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5147_low_5 (Length: 397)

Name: NF5147_low_5
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5147_low_5
NF5147_low_5
[»] chr5 (7 HSPs)
chr5 (246-353)||(4323810-4323917)
chr5 (18-144)||(4323584-4323710)
chr5 (247-330)||(8299626-8299709)
chr5 (247-330)||(25856883-25856966)
chr5 (247-313)||(27116617-27116683)
chr5 (291-324)||(21271026-21271059)
chr5 (291-324)||(21273040-21273073)
[»] chr4 (7 HSPs)
chr4 (247-315)||(5789536-5789604)
chr4 (284-345)||(11586679-11586740)
chr4 (248-319)||(7099106-7099177)
chr4 (284-327)||(28067073-28067116)
chr4 (285-324)||(46218326-46218365)
chr4 (293-327)||(17188468-17188502)
chr4 (247-313)||(23642035-23642101)
[»] chr7 (5 HSPs)
chr7 (248-323)||(22819162-22819237)
chr7 (251-320)||(12308570-12308639)
chr7 (248-323)||(17056149-17056224)
chr7 (247-313)||(4937572-4937638)
chr7 (287-335)||(39465005-39465053)
[»] chr3 (6 HSPs)
chr3 (248-323)||(31547998-31548073)
chr3 (247-315)||(16179575-16179643)
chr3 (248-323)||(44888524-44888599)
chr3 (247-313)||(2364907-2364973)
chr3 (285-327)||(36731525-36731567)
chr3 (247-324)||(35273706-35273783)
[»] chr8 (6 HSPs)
chr8 (248-312)||(40366279-40366343)
chr8 (247-330)||(20824912-20824995)
chr8 (247-313)||(7925016-7925082)
chr8 (247-313)||(8300433-8300499)
chr8 (247-320)||(37434403-37434476)
chr8 (282-342)||(15014093-15014153)
[»] chr1 (5 HSPs)
chr1 (267-323)||(21405457-21405513)
chr1 (248-323)||(22191227-22191302)
chr1 (247-313)||(35541664-35541730)
chr1 (282-335)||(11649771-11649824)
chr1 (284-320)||(43943959-43943995)
[»] chr6 (2 HSPs)
chr6 (267-338)||(24573721-24573792)
chr6 (256-330)||(17577171-17577245)
[»] chr2 (2 HSPs)
chr2 (285-324)||(42183246-42183285)
chr2 (285-327)||(18697831-18697873)
[»] scaffold0155 (1 HSPs)
scaffold0155 (293-327)||(32781-32815)
[»] scaffold0034 (1 HSPs)
scaffold0034 (247-313)||(105287-105353)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 4323810 - 4323917
Alignment:
Q  246 agttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggtttaaagtgtt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4323810 agttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaagttgttagttgataaggaaggtttttggtttaaagtgtt 4323909  T
Q  346 ggcggcca 353  Q
    ||| ||||    
T  4323910 ggctgcca 4323917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 4323584 - 4323710
Alignment:
Q  18 tatttgaatcgcttaaaaaacgaggaattgaattgaacaaaaatattagcgtnnnnnnnnctgaacaaaaattatttgtcatgagtttgatttaaaaatg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  4323584 tatttgaatcgcttaaaaaacgatgaattgaattgaacaaaaatattagcgtaaaaaaaactgaacaaaaattatttgtcatgagtttgatttaaaaatg 4323683  T
Q  118 gaaaaagaatgacagggattggacaag 144  Q
    |||||||||||||||||||||||||||    
T  4323684 gaaaaagaatgacagggattggacaag 4323710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 8299626 - 8299709
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggttt 330  Q
    |||||| |||||| ||||||| ||||||||| |  || ||||||| || |||||||||||| |||||||||||| || ||||||    
T  8299626 gttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggtgttggaggctgttagttgataggggaggttt 8299709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 25856883 - 25856966
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggttt 330  Q
    |||||| |||||| ||||||| ||||||||| |  || ||||||| || ||||||| |||| |||||||||||| || ||||||    
T  25856883 gttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggtgttagaggctgttagttgataggggaggttt 25856966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 27116617 - 27116683
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  27116617 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 27116683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 21271059 - 21271026
Alignment:
Q  291 gaaagtggtgttggaggttgttagttgataagga 324  Q
    |||||||||||||||||||||| |||||||||||    
T  21271059 gaaagtggtgttggaggttgttggttgataagga 21271026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 21273073 - 21273040
Alignment:
Q  291 gaaagtggtgttggaggttgttagttgataagga 324  Q
    |||||||||||||||||||||| |||||||||||    
T  21273073 gaaagtggtgttggaggttgttggttgataagga 21273040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 5789536 - 5789604
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagt 315  Q
    |||||| | |||| ||||| |||||||||| || ||| |||||||||||||||||||||||||||||||    
T  5789536 gttgggagataggaggttgagggagtttaatgtcactttgttgggaaagtggtgttggaggttgttagt 5789604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 11586679 - 11586740
Alignment:
Q  284 ctgttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggtttaaagtgtt 345  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||| || |||| ||| |||||    
T  11586679 ctgttaggaaaatggtgttggcggttgttagttgataaggaagggttgtggtgtaaggtgtt 11586740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 7099177 - 7099106
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgat 319  Q
    ||||| ||||||| |||| |||||||||| | | |  |||||||||||| ||||||||| ||||||||||||    
T  7099177 ttgggtgttaggcagttgagggagtttaatgaggcgttgttgggaaagttgtgttggagtttgttagttgat 7099106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 28067073 - 28067116
Alignment:
Q  284 ctgttgggaaagtggtgttggaggttgttagttgataaggaagg 327  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||    
T  28067073 ctgttggggaagtggtgttggaggatgttggttgataaggaagg 28067116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 46218326 - 46218365
Alignment:
Q  285 tgttgggaaagtggtgttggaggttgttagttgataagga 324  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  46218326 tgttgggtaagtggtgttggaggttgttggttgataagga 46218365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 17188502 - 17188468
Alignment:
Q  293 aagtggtgttggaggttgttagttgataaggaagg 327  Q
    |||||||||||||||||||| ||||||||||||||    
T  17188502 aagtggtgttggaggttgttggttgataaggaagg 17188468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 23642035 - 23642101
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  23642035 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 23642101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 22819162 - 22819237
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||| ||| ||||| |||||||||| ||  ||||||| || ||||||||||||||||| ||||| |||||||    
T  22819162 ttgggggtgaggaggttgagggagtttaatgtttctctgttaggcaagtggtgttggaggttattagtcgataagg 22819237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 12308570 - 12308639
Alignment:
Q  251 ggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgata 320  Q
    |||||||||| |||| || ||||||   || |||||||||||||||||||||||||| || |||||||||    
T  12308570 ggggttaggcagttgaggtagtttattttgtctctgttgggaaagtggtgttggaggatgctagttgata 12308639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 17056224 - 17056149
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||| ||| || || |||||||||| ||  ||||||| || || |||||||||||||| |||||||||||||    
T  17056224 ttgggggtgaggaggatgagggagtttaatgtttctctgttaggtaaatggtgttggaggttattagttgataagg 17056149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 4937572 - 4937638
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  4937572 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 4937638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 39465053 - 39465005
Alignment:
Q  287 ttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggt 335  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||| ||||    
T  39465053 ttgggtaagtggtgttggaggatgttggttgataaggagggtttatggt 39465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 31548073 - 31547998
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||| ||| || || |||||||||| ||  ||||||| ||||| |||||||||||||| |||||||||||||    
T  31548073 ttgggggtgaggaggatgagggagtttaatgtttctctgttaggaaaatggtgttggaggttattagttgataagg 31547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 16179643 - 16179575
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagt 315  Q
    |||||| |||||| ||||| |||||||||| ||  || ||||||| || ||||||||||||||||||||    
T  16179643 gttgggagttaggaggttgagggagtttaatgtcgctttgttggggaaatggtgttggaggttgttagt 16179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 44888599 - 44888524
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||| ||| || || |||||||||| ||  ||||||| || || |||||||||||||| |||||||||||||    
T  44888599 ttgggggtgaggaggatgagggagtttaatgtttctctgttaggtaaatggtgttggaggttattagttgataagg 44888524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 2364973 - 2364907
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  2364973 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 2364907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 36731567 - 36731525
Alignment:
Q  285 tgttgggaaagtggtgttggaggttgttagttgataaggaagg 327  Q
    |||| |||||||||||||||||| |||| ||||||||||||||    
T  36731567 tgttaggaaagtggtgttggaggatgttggttgataaggaagg 36731525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 35273783 - 35273706
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagga 324  Q
    |||||||||||| |||||| | ||||||||  |  ||||||| || ||||||||||||| | |||| |||||||||||    
T  35273783 gttgggggttagacggttgggagagtttaatttttctctgttagggaagtggtgttggaagatgttggttgataagga 35273706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 40366343 - 40366279
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtt 312  Q
    |||||||||||||||||| |||||||||| |||  |||||| || || |||||||||||| ||||    
T  40366343 ttgggggttaggcggttgagggagtttaatgtggttctgtttggtaaatggtgttggaggatgtt 40366279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20824995 - 20824912
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggttt 330  Q
    |||||| |||||| ||||| | ||||||||| |  || ||||||| || |||||||||||| |||||||||||| || ||||||    
T  20824995 gttgggtgttaggaggttgagagagtttaacattgctttgttggggaaatggtgttggaggctgttagttgataggggaggttt 20824912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 7925082 - 7925016
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  7925082 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 7925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 8300499 - 8300433
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  8300499 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 8300433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 37434403 - 37434476
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgata 320  Q
    |||||| |||||| ||||| | ||||||||| |  || |||||||||| ||||||||| || ||||||||||||    
T  37434403 gttgggtgttaggaggttgagagagtttaacattgctttgttgggaaaatggtgttggcggctgttagttgata 37434476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 15014153 - 15014093
Alignment:
Q  282 ctctgttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggtttaaagt 342  Q
    ||||||| || ||||||||||||||  ||||||| |||||||| ||||| |||| ||||||    
T  15014153 ctctgttagggaagtggtgttggagaatgttagtagataaggagggtttatggtataaagt 15014093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 21405513 - 21405457
Alignment:
Q  267 gggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||||| ||  ||||||| ||||| |||||||||||||| |||||||||||||    
T  21405513 gggagtttaatgtttctctgttaggaaaatggtgttggaggttattagttgataagg 21405457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 22191227 - 22191302
Alignment:
Q  248 ttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataagg 323  Q
    |||||||| ||| || || |||||||||| ||  ||||||| || || |||||||||||||| |||||||||||||    
T  22191227 ttgggggtgaggaggatgagggagtttaatgtttctctgttaggtaaatggtgttggaggttattagttgataagg 22191302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 35541730 - 35541664
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  35541730 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 35541664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 11649824 - 11649771
Alignment:
Q  282 ctctgttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggt 335  Q
    ||||||| || ||||||||||||||| |||| ||||||||||| ||||| ||||    
T  11649824 ctctgttagggaagtggtgttggaggatgttggttgataaggatggtttgtggt 11649771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 43943959 - 43943995
Alignment:
Q  284 ctgttgggaaagtggtgttggaggttgttagttgata 320  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  43943959 ctgttgggtaagtggtgttggaggatgttagttgata 43943995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 24573792 - 24573721
Alignment:
Q  267 gggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggtttttggttta 338  Q
    ||||||||||| || | |||||||||||||||||||||||| || |||| ||||  || ||||| |||||||    
T  24573792 gggagtttaacttggcgctgttgggaaagtggtgttggaggatggtagtggatagagatggtttgtggttta 24573721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 17577171 - 17577245
Alignment:
Q  256 taggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgttagttgataaggaaggttt 330  Q
    |||| ||||||| ||||||||| |  || ||||||| || |||||||||||| |||||||||||| || ||||||    
T  17577171 taggaggttgcgagagtttaacattgctttgttggggaaatggtgttggaggctgttagttgataggggaggttt 17577245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 42183246 - 42183285
Alignment:
Q  285 tgttgggaaagtggtgttggaggttgttagttgataagga 324  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  42183246 tgttaggaaagtggtgttggaggttgttggttgataagga 42183285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 18697873 - 18697831
Alignment:
Q  285 tgttgggaaagtggtgttggaggttgttagttgataaggaagg 327  Q
    |||| |||||||||||||||||| |||| ||||||||||||||    
T  18697873 tgttaggaaagtggtgttggaggatgttggttgataaggaagg 18697831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 32815 - 32781
Alignment:
Q  293 aagtggtgttggaggttgttagttgataaggaagg 327  Q
    |||||||||||||||||||| ||||||||||||||    
T  32815 aagtggtgttggaggttgttggttgataaggaagg 32781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 105287 - 105353
Alignment:
Q  247 gttgggggttaggcggttgcgggagtttaacgtgactctgttgggaaagtggtgttggaggttgtta 313  Q
    ||||||||||| | ||||| ||||||||||| |  || ||||||| || ||||||||||||||||||    
T  105287 gttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University