View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_6 (Length: 312)
Name: NF5147_low_6
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_6 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 24415452 - 24415729
Alignment:
| Q |
19 |
aatcctcatagacaaatttggtactagcgtgtgatttctaccagttttctacatggagacattatatataattgatactcaactgttctttaaccattgt |
118 |
Q |
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| T |
24415452 |
aatcctcatagacaaatttggtactagcgcgcgatttctaccagttttctacatggagacattatatataattgatactcaactgttctttaaccattgt |
24415551 |
T |
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| Q |
119 |
acgtagtttgctcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaacnnnnnnnatacgatgttgcatattatttgttgtaca |
218 |
Q |
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| T |
24415552 |
acgtagtttggtcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaactttttttatatgatgttgcatattatttgttgtaca |
24415651 |
T |
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| Q |
219 |
caaatttttctcattagttctctaacatctacatgtatcttttttgtactggtattcttttgcaagaacagttgcttg |
296 |
Q |
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| T |
24415652 |
caaatttttctcattagttctctaacatctacctgtatcttttttgtactaatattcttttgcaagaacagttgcttg |
24415729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 29146107 - 29146170
Alignment:
| Q |
198 |
ttgcatattatttgttgtacacaaatttttctcattagttctctaacatctacatgtatctttttt |
263 |
Q |
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| T |
29146107 |
ttgcatattatttattgtacaaaaaaatttctcatt--ttttctaacatctacatgtagctttttt |
29146170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 29146193 - 29146234
Alignment:
| Q |
255 |
atcttttttgtactggtattcttttgcaagaacagttgcttg |
296 |
Q |
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| T |
29146193 |
atcttttttgtactaatattcttttgcaggaacagttgcttg |
29146234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 32958310 - 32958241
Alignment:
| Q |
29 |
gacaaatttggtactagcgtgtgatttctaccagttttctacatggagacattatatataattgatactcaact |
102 |
Q |
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|||||||||||||||| |||||||||||||| | |||| || ||||| | || |||||||||||||||||| |
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| T |
32958310 |
gacaaatttggtactaacgtgtgatttctacaacttttttaaatggaaaaat----tataattgatactcaact |
32958241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 264
Target Start/End: Original strand, 43088 - 43236
Alignment:
| Q |
113 |
cattgtacgtagtttgctcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaacnnnnnnnatacgatgttgcatattatttgt |
212 |
Q |
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| T |
43088 |
cattgtacgtattttgatcttcttacttatacctaacttacatgttcatgggtctgag--tgaatagaactttttttatatgatgctgcatattatta-t |
43184 |
T |
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| Q |
213 |
tgtacacaaatttttctcattagttctctaacatctacatgtatcttttttg |
264 |
Q |
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| T |
43185 |
tgtacacaaatttttctcattagttctctaacacctacatgtatcttttttg |
43236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 42883 - 42978
Alignment:
| Q |
19 |
aatcctcatagacaaatttggtactagcgtgtgatttctaccagttttctacatggagacattatatataattgatactcaactgttctttaaccat |
115 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| || || ||| ||||||||| ||||||||||||||||| |
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| T |
42883 |
aatccacatagacaaatttggtattagcgtgtgatttctaccagttttctaaaaggagaaatcatgtat-attgatacttaactgttctttaaccat |
42978 |
T |
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