View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_8 (Length: 253)
Name: NF5147_low_8
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3235504 - 3235270
Alignment:
| Q |
1 |
tcatcaccacatggttggtatacctttgtagcacaattttttaaatgcttttcaaacaatgatggctgggttgatgcatcaagaggggtttcatttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3235504 |
tcatcaccacatggttggtatacctttgtagcacaattttttaaatgcttttcaaacaatgatggctgggttgatgcatcaagagggggttcatttgata |
3235405 |
T |
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| Q |
101 |
cttgagcatgaggtgaaattccagtttcaactaacaaagcaaaacaagttaatactattggtaataaactaaaagtattgaatgtagccatggctaattt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3235404 |
cttgagcatgagatgaaattccagtttcaactaacaaagcaaaataagttaatactattggtaataaactaaaagtattgaatgtagccatggctaattt |
3235305 |
T |
|
| Q |
201 |
tattttttagatataggataaatggtggcttgtta |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3235304 |
tattttttagatataggataaatggtggcttgtta |
3235270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 3232919 - 3232727
Alignment:
| Q |
1 |
tcatcaccacatggttggtatacctttgtagcacaattttttaaatgcttttcaaacaatgatggctgggttgatgcatcaagaggggtttcatttgata |
100 |
Q |
| |
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|||||||||||||||||||||| |||||| |||||||||||||| || ||||||||| |||||| |||||||| ||||| | |||||| |||||||||| |
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| T |
3232919 |
tcatcaccacatggttggtataactttgttgcacaattttttaagtgtttttcaaaccatgatgactgggttggtgcatgaggagggggatcatttgata |
3232820 |
T |
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| Q |
101 |
cttgagcatgaggtgaaattccagtttcaactaacaaagcaaaacaagttaatactattggtaataaactaaaagtattgaatgtagccatgg |
193 |
Q |
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|||| |||||| ||||||||| |||| ||||||||||||| || ||| || ||||||||||||||||||||| || |||||||| ||||||| |
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| T |
3232819 |
gttgaacatgagatgaaattccggtttgaactaacaaagcacaataagctattactattggtaataaactaaaggtgttgaatgttgccatgg |
3232727 |
T |
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