View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5147_low_9 (Length: 251)
Name: NF5147_low_9
Description: NF5147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5147_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 35037719 - 35037638
Alignment:
| Q |
103 |
gcaactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtagaaatacattgtacgttacta |
184 |
Q |
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| T |
35037719 |
gcaactagaggaataaattatgtattaagtatcaacataactaataagaacaaaatatgtaaaaatacattgtacgttacta |
35037638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 35037576 - 35037508
Alignment:
| Q |
183 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctca |
251 |
Q |
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| T |
35037576 |
taatatgaacaatctggttcacctggatgctgtggataagattcagaatctattgtttcacctacctca |
35037508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 35037754 - 35037716
Alignment:
| Q |
3 |
tggaggagcagagatcattcatcccatttgaccctgcaa |
41 |
Q |
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| T |
35037754 |
tggaggagtagagatcattcatcccatttgaccctgcaa |
35037716 |
T |
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