View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148-Insertion-1 (Length: 681)
Name: NF5148-Insertion-1
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148-Insertion-1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 190 - 681
Target Start/End: Complemental strand, 3885034 - 3884545
Alignment:
| Q |
190 |
cgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgc |
289 |
Q |
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| T |
3885034 |
cgcacattgatgtatttcttttgaatgagaatccgatgctctttagtgcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgc |
3884935 |
T |
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| Q |
290 |
aatttcatcatatcatataaacatatatacattttaattagcaacacnnnnnnntttccccgaacataattttttatcatctaaatcaatcttttgaatg |
389 |
Q |
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| T |
3884934 |
aatttcatcatatcatataaacatatatacattttaattagcaacacaaaaaa-tttccccgaacataattttttatcatctaaatcaatcttttgaatg |
3884836 |
T |
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| Q |
390 |
gaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctagctgtggcttctcctctatacatag |
489 |
Q |
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| T |
3884835 |
gaacttgaagctaataggaggggaagcaaattttcttcatttgagagagtagcagccataagcttggtagttctagctgtggcttctcctctatacatag |
3884736 |
T |
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| Q |
490 |
atcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatcttt |
589 |
Q |
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| T |
3884735 |
atcacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatcttt |
3884636 |
T |
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| Q |
590 |
atcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattctta |
681 |
Q |
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| T |
3884635 |
atcagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggt-gttcttctggtggtattgttttcattctta |
3884545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 366 - 681
Target Start/End: Complemental strand, 3874331 - 3874016
Alignment:
| Q |
366 |
tcatctaaatcaatcttttgaatggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagcagcagccataagcttggtagttctag |
465 |
Q |
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| T |
3874331 |
tcatctaaatcaatcttctgaatggaacctgaagctagtaggaggggtcacaaattttcatcttatgagagagtagcagccataagcttagtagttctag |
3874232 |
T |
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| Q |
466 |
ctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttt |
565 |
Q |
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| T |
3874231 |
ctgtggcttctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttt |
3874132 |
T |
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| Q |
566 |
tgtattggttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggt |
665 |
Q |
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| T |
3874131 |
tgtattggttttagtcatatctttatcagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggt |
3874032 |
T |
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| Q |
666 |
attgttttcattctta |
681 |
Q |
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| T |
3874031 |
attgttttcattctta |
3874016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 3885213 - 3885097
Alignment:
| Q |
10 |
aaccctatcgaaattgtgataat--ggagtctctttgattttctatgagcttgtttgctcctgcttaaattaatcattgtcagctgataattctaagttt |
107 |
Q |
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| T |
3885213 |
aaccctatcgaaattgtgataatatggagtctctttgtttttctacgagcttgtttgctcctgcttaaattaatcattgtcagctgataattctaagttt |
3885114 |
T |
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| Q |
108 |
tcatatgactgttttat |
124 |
Q |
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| T |
3885113 |
tcatatgactgttttat |
3885097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 3874462 - 3874337
Alignment:
| Q |
215 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatatcatat-aa |
309 |
Q |
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| T |
3874462 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaacatttttgtgttgcaattccatcatatcatatcat |
3874364 |
T |
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| Q |
310 |
acatatatacattttaattagcaacac |
336 |
Q |
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| T |
3874363 |
atatacatacattttaattaacaacac |
3874337 |
T |
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