View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148-Insertion-2 (Length: 601)
Name: NF5148-Insertion-2
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Complemental strand, 49036459 - 49035913
Alignment:
| Q |
7 |
actctcgtgtcattaggggtaataaatcagcttcnnnnnnnccaccaaaattcactatttttaaggagnnnnnnncatggcttggaaccaaaatatattg |
106 |
Q |
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| T |
49036459 |
actctcgtgtcattaggggtaataaatcggcttctttttttccaccaaaattcactatttttagggagaaaaaaacatggcttggaaccaaaatatattg |
49036360 |
T |
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| Q |
107 |
taataaatgtgatgatagattgcccaaaaagtttgattttaaaataaaaggactatttttgtaagtttataaaatatgggatcaaaactacaattaaatc |
206 |
Q |
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| T |
49036359 |
taataaatgtgataatagattgcccaaaaggtttgattttaaaataaagggactatttttgtaagtttataaaatatgggatcaaaactacaattaaatc |
49036260 |
T |
|
| Q |
207 |
tttgtgcattgtttaactttttgaagagttaaaattgattttagaaatgtagaattgatttaatcatgttggaatgctataaattagaattgaccctaat |
306 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49036259 |
tttgtgcattgtttcactttttgaagagttaaaattgattttagaaatgtagaattgatttaatcatgttggaatgctataaattagaattgaccctaat |
49036160 |
T |
|
| Q |
307 |
ttattctctacgtgcagctcgattgatagttttataaacgttgatatgtagttgtattaaattcattcaaaacttatgnnnnnnntgtattgaaatacaa |
406 |
Q |
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| T |
49036159 |
ttattctctacgtgcagctccattgatagttttataaacgttgatatgtagttgtattaaattcattcaaagcttatgaaaaaaatgtattgaaatacaa |
49036060 |
T |
|
| Q |
407 |
atcaactcaattgtatccataataaatttggtaaatcaatatgtttcaccacataaacaaacacacagtaatttgtcttagttttcactatccgctatta |
506 |
Q |
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| T |
49036059 |
atcaactcaattgtatccataataaatttggtaaatcaatatgtttcaccacataaacaa--acacagtaatttgtcttagttttcactatccgctatta |
49035962 |
T |
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| Q |
507 |
tcatcgaccaagaaaaaataatcaaactagtatttaaaaatttggaaag |
555 |
Q |
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| T |
49035961 |
tcatcgacctagaaaaaataatcaaactagtatttaaaaatttggaaag |
49035913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 565 - 601
Target Start/End: Complemental strand, 49035890 - 49035854
Alignment:
| Q |
565 |
ttaatatgagcataaaagagtagttaagtttgttaca |
601 |
Q |
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| T |
49035890 |
ttaatatgagcataaaggagtagttaagtttgttaca |
49035854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 39011858 - 39011911
Alignment:
| Q |
130 |
ccaaaaagtttgattttaaaataaaaggactatttttgtaagttt-ataaaata |
182 |
Q |
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| T |
39011858 |
ccaaaaaatttgattttaaaataggaggactatttttgtgagtttgataaaata |
39011911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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