View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148-Insertion-3 (Length: 588)
Name: NF5148-Insertion-3
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 6 - 588
Target Start/End: Complemental strand, 39006859 - 39006277
Alignment:
| Q |
6 |
cagtatttgagtcataactttcaatgagtgcttttgccagtccaaaatctcccaagtgtgcctccattttggaatctagcaatatgttactggatttgat |
105 |
Q |
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| T |
39006859 |
cagtatttgagtcataactttcaatgagtgcttttgccagtccaaaatctcccaagtgtgcctccattttggaatctagcaatatgttgctggatttgat |
39006760 |
T |
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| Q |
106 |
gtctctgtgaatgatctttggtgcacaatcgtgatgtaggtactccactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaaggttc |
205 |
Q |
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| T |
39006759 |
gtctctgtgaatgatctttggtgcacaatcgtgatgtaggtactccactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaaggttc |
39006660 |
T |
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| Q |
206 |
ttctttactttgctcgcgatgtttggtttcctgtgaagccagtcccataaacttccattctccatgtactcatagatcaataaattcgaacttgctcctt |
305 |
Q |
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| T |
39006659 |
ttctttactttgctcgcgatgtttggtttcctgtgaagccagtcccataaacttccattctccatgtactcatagatcaataaattcgaacttgctcctt |
39006560 |
T |
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| Q |
306 |
tgtttctattgctacagaatcctattagcttcaccaaatgtctatgctttattctccccagtgtattaacttctcttaagaaacttttgtttaacagaaa |
405 |
Q |
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| T |
39006559 |
tgtttctactgctacagaatcctattagcttcaccaaatgtctatgctttattctccccagtgtattaacttctcttaagaaacttttgtttaacagaaa |
39006460 |
T |
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| Q |
406 |
gtcatcttttgatgaaatcttcttgacagcaactgtctctccactggccaattcagctttgtagactttccctgaacctcccgaaccaatcatgaagtca |
505 |
Q |
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| T |
39006459 |
gtcatcttttgatgaaatcttcttgacagcaactgtctctccactggccaattcagctttgtagactttccctgaacctcccgaaccaatcatgaagtca |
39006360 |
T |
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| Q |
506 |
tcatttagattgttcgttgcatccatgatatcttcccaattgaaatccctttttccagcagctcttagctggaacaacggtcg |
588 |
Q |
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| T |
39006359 |
tcatttagattgttcgttgcatccatgatatcttcccaattgaaatccctttttccagcagctcttagctggaacaacggtcg |
39006277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 539
Target Start/End: Original strand, 14880987 - 14881483
Alignment:
| Q |
34 |
tgcttttgccagtccaaaatctcccaagtgtgcctccattttggaatctagcaatatgttactggatttgatgtctctgtgaatgatctttggtgcacaa |
133 |
Q |
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| T |
14880987 |
tgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatatcccggtgaatgatctttggcacacaa |
14881086 |
T |
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| Q |
134 |
tcgtgatgtaggtactccactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaagg-ttcttctttactttgctcgcgatgtttggt |
232 |
Q |
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| T |
14881087 |
tcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaaggcttctccttaactt-----gaga-----gca |
14881176 |
T |
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| Q |
233 |
ttcctgtgaagccagtcccataaacttccattctccatgtactcatagatcaataaattcgaacttgctcctttgtttctattgctacagaatcctatta |
332 |
Q |
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| T |
14881177 |
tttccatgtaaccaatcccaaacacttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtctattgctacaacaaccaacca |
14881276 |
T |
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| Q |
333 |
gcttcaccaaatgtctatgctttattctccccagtgtattaacttctcttaagaaacttttgtttaacagaaagtcatcttttgatgaaatcttcttgac |
432 |
Q |
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| T |
14881277 |
gtttcaccaaatgtctatgcttaatcctccctaaagtcttcacttctcttataaagcttttatgcaacagatattcgtctttcaatgaaatcttcttgac |
14881376 |
T |
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| Q |
433 |
agcaactgtctctccactggccaattcagctttgtagactttccctgaacctcccgaaccaatcatgaagtcatcatttagattgttcgttgcatccatg |
532 |
Q |
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| T |
14881377 |
agcaacagtctcaccggtaggcaattcaactctgtagactgttccagaacctccagaaccgattatgaattcatcactcaaattgtttgtagcatccatg |
14881476 |
T |
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