View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5148-Insertion-4 (Length: 550)
Name: NF5148-Insertion-4
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148-Insertion-4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 185 - 550
Target Start/End: Complemental strand, 6516895 - 6516527
Alignment:
| Q |
185 |
tttgttataccttatgtgaaagaaagttgttcaaaaatcaaaa---------tgatgtgggctgataacatgttgcttaaccttagcccttgaattgtcc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516895 |
tttgttataccttatgtgaaagaaagttgttcaaaaatcaaaagtagtatcatgatgtgggctgataacatgttgcttaaccttagcccttgaattgtcc |
6516796 |
T |
|
| Q |
276 |
cgtcccacttgcagtattttatggtacaaaaccagtgataannnnnnnnnnagttgaatttcgtttccnnnnnnngtcactaacatgacagttttaaatt |
375 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6516795 |
c-----acttgcagtattttatggtacaaaaccagtgataattttttttttagttgaatttcgtttcctttttttgtcactaacatgacagttttaaatt |
6516701 |
T |
|
| Q |
376 |
taattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaagtagaaatattatttctgctgattatttttattatataatat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516700 |
taattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaagtaaaaatattatttctgctgattatttttattatataatat |
6516601 |
T |
|
| Q |
476 |
ttacactgatacatataaatgttttggcatttaggggtcctatagggtttaatgttgcatgcagaaccatctttc |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6516600 |
ttacactgatacatataaatgttttggcatttaggggtcctata-ggtttaatgttgcatgcagaaccatctttc |
6516527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 6517425 - 6517340
Alignment:
| Q |
43 |
tgttgtacattagctgcatttctatcctaaacatgtgtttgtgttgcttggctgatgctattaatgattgtaccttgcacagtaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6517425 |
tgttgtacattagctgcatttctatcctaaacatgtgtttgtgttgcttggctgatgctattaatgattgtaccttgcacagtaca |
6517340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 27254752 - 27254828
Alignment:
| Q |
357 |
aacatgacagttttaaatttaattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaa |
433 |
Q |
| |
|
||||| |||||||| ||||||||| ||||| |||||||| || || ||||||||||||||||| |||||||||||| |
|
|
| T |
27254752 |
aacatcacagttttgaatttaattgtgcccaggaaacacatgcggacggtgatcctgaacttctggacgattctgaa |
27254828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 1745996 - 1746072
Alignment:
| Q |
357 |
aacatgacagttttaaatttaattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaa |
433 |
Q |
| |
|
||||| |||| ||| ||||||||| ||| | |||||||| || ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
1745996 |
aacatcacagctttgaatttaattgtgctcaggaaacacatgctgacggtgatcctgaacttctggacgattctgaa |
1746072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University